miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14273 5' -55.9 NC_003521.1 + 100998 0.68 0.885317
Target:  5'- cGCuCGCuGaGGGAGGACAGgggCGCGUc -3'
miRNA:   3'- aCG-GCGuCcUCCUCCUGUUa--GUGCAc -5'
14273 5' -55.9 NC_003521.1 + 168995 0.7 0.808104
Target:  5'- gGUCGCGGGAGGcGGGCGAcggggccggCACGa- -3'
miRNA:   3'- aCGGCGUCCUCCuCCUGUUa--------GUGCac -5'
14273 5' -55.9 NC_003521.1 + 62229 0.7 0.816625
Target:  5'- gUGCUGCAGGAGGGcgcccggcuGGACg--CGCGg- -3'
miRNA:   3'- -ACGGCGUCCUCCU---------CCUGuuaGUGCac -5'
14273 5' -55.9 NC_003521.1 + 130239 0.7 0.824987
Target:  5'- gGCCGCgugcugggcgucAGuGAGGuGGACGAcUACGUGg -3'
miRNA:   3'- aCGGCG------------UC-CUCCuCCUGUUaGUGCAC- -5'
14273 5' -55.9 NC_003521.1 + 100716 0.7 0.833181
Target:  5'- gGCCGCugauGGAGGAGG-CGGgggguUCAUGUc -3'
miRNA:   3'- aCGGCGu---CCUCCUCCuGUU-----AGUGCAc -5'
14273 5' -55.9 NC_003521.1 + 18095 0.69 0.87847
Target:  5'- gGCCGCGGGGacGGAGGAgGua-GCGgUGg -3'
miRNA:   3'- aCGGCGUCCU--CCUCCUgUuagUGC-AC- -5'
14273 5' -55.9 NC_003521.1 + 145489 0.69 0.87847
Target:  5'- cGCUGCAGGuGGAGcccuGCGcgCGCGUc -3'
miRNA:   3'- aCGGCGUCCuCCUCc---UGUuaGUGCAc -5'
14273 5' -55.9 NC_003521.1 + 69447 0.68 0.885317
Target:  5'- aGUCGCAGGugcgcgAGGcgcAGGGCAggAUCACGUc -3'
miRNA:   3'- aCGGCGUCC------UCC---UCCUGU--UAGUGCAc -5'
14273 5' -55.9 NC_003521.1 + 60691 0.68 0.885317
Target:  5'- gGCCGCGcGGGGGAcccggGGGCGG-CGCGg- -3'
miRNA:   3'- aCGGCGU-CCUCCU-----CCUGUUaGUGCac -5'
14273 5' -55.9 NC_003521.1 + 59178 0.71 0.771665
Target:  5'- cGCCGCGGGcagucAGGA-GACGuuaaauauccugaGUCGCGUGg -3'
miRNA:   3'- aCGGCGUCC-----UCCUcCUGU-------------UAGUGCAC- -5'
14273 5' -55.9 NC_003521.1 + 4229 0.71 0.76338
Target:  5'- gGCCcCGGGAGGAGGACcGagACGg- -3'
miRNA:   3'- aCGGcGUCCUCCUCCUGuUagUGCac -5'
14273 5' -55.9 NC_003521.1 + 103879 0.71 0.754069
Target:  5'- cGCCGaCAGGGGGAuGGGCugccgCGCGg- -3'
miRNA:   3'- aCGGC-GUCCUCCU-CCUGuua--GUGCac -5'
14273 5' -55.9 NC_003521.1 + 164742 0.76 0.499723
Target:  5'- aG-CGCGGGAGGGGGGCA-UCGCGg- -3'
miRNA:   3'- aCgGCGUCCUCCUCCUGUuAGUGCac -5'
14273 5' -55.9 NC_003521.1 + 154398 0.76 0.499723
Target:  5'- cUGCCGCcaaucAGGAGGcGGGCAcgCGCGUc -3'
miRNA:   3'- -ACGGCG-----UCCUCCuCCUGUuaGUGCAc -5'
14273 5' -55.9 NC_003521.1 + 82635 0.75 0.547634
Target:  5'- cGCCGCcGGAGGAGGGCGucCGCa-- -3'
miRNA:   3'- aCGGCGuCCUCCUCCUGUuaGUGcac -5'
14273 5' -55.9 NC_003521.1 + 113365 0.73 0.666692
Target:  5'- gGCCGgGGGcgAGGAGGAgGGUUACGg- -3'
miRNA:   3'- aCGGCgUCC--UCCUCCUgUUAGUGCac -5'
14273 5' -55.9 NC_003521.1 + 172878 0.72 0.715888
Target:  5'- aGCUGCAGGAGGAGGAag---ACGa- -3'
miRNA:   3'- aCGGCGUCCUCCUCCUguuagUGCac -5'
14273 5' -55.9 NC_003521.1 + 129884 0.72 0.715888
Target:  5'- gGCCGgggAGGAGGAGGACGAcgACGg- -3'
miRNA:   3'- aCGGCg--UCCUCCUCCUGUUagUGCac -5'
14273 5' -55.9 NC_003521.1 + 116193 0.72 0.735149
Target:  5'- gGCCGCGGaGAGGAGGGagacGUCGcCGUc -3'
miRNA:   3'- aCGGCGUC-CUCCUCCUgu--UAGU-GCAc -5'
14273 5' -55.9 NC_003521.1 + 49010 0.71 0.754069
Target:  5'- cGUCGUAGGGGGcAGuACAGUCACGc- -3'
miRNA:   3'- aCGGCGUCCUCC-UCcUGUUAGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.