miRNA display CGI


Results 1 - 20 of 555 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14274 3' -61.8 NC_003521.1 + 104040 0.66 0.794485
Target:  5'- cGuGACCGUgaGCCCGCUgucGCGCAG-GUa -3'
miRNA:   3'- aC-CUGGCGagCGGGUGG---UGCGUCgCG- -5'
14274 3' -61.8 NC_003521.1 + 228153 0.66 0.794485
Target:  5'- cGG-UCGCggCGCaCCaACCACuuGUAGCGCu -3'
miRNA:   3'- aCCuGGCGa-GCG-GG-UGGUG--CGUCGCG- -5'
14274 3' -61.8 NC_003521.1 + 34694 0.66 0.794485
Target:  5'- cGGcCCGUUCuCagCAUCGCGCAGCaGCu -3'
miRNA:   3'- aCCuGGCGAGcGg-GUGGUGCGUCG-CG- -5'
14274 3' -61.8 NC_003521.1 + 176043 0.66 0.794485
Target:  5'- aGGGuCUGCaggcgcuugggaUCGCCCgguGCCGCGCcggccGGCGUc -3'
miRNA:   3'- aCCU-GGCG------------AGCGGG---UGGUGCG-----UCGCG- -5'
14274 3' -61.8 NC_003521.1 + 152760 0.66 0.794485
Target:  5'- gGGcGCCGC-CGaCCACCGCGaccucauccGCGCg -3'
miRNA:   3'- aCC-UGGCGaGCgGGUGGUGCgu-------CGCG- -5'
14274 3' -61.8 NC_003521.1 + 207620 0.66 0.794485
Target:  5'- cUGGGCgGCUCGCCgGCC-UGCAc--- -3'
miRNA:   3'- -ACCUGgCGAGCGGgUGGuGCGUcgcg -5'
14274 3' -61.8 NC_003521.1 + 240048 0.66 0.794485
Target:  5'- cGGuccuCCGCcgauggCGCCUGCUugGCcuccGGCGUg -3'
miRNA:   3'- aCCu---GGCGa-----GCGGGUGGugCG----UCGCG- -5'
14274 3' -61.8 NC_003521.1 + 212210 0.66 0.794485
Target:  5'- -aGACgGCgUGCagCACCACGUAGCGg -3'
miRNA:   3'- acCUGgCGaGCGg-GUGGUGCGUCGCg -5'
14274 3' -61.8 NC_003521.1 + 152612 0.66 0.794485
Target:  5'- cGGcgccCUGgUUGgUCACCAgGCGGCGCa -3'
miRNA:   3'- aCCu---GGCgAGCgGGUGGUgCGUCGCG- -5'
14274 3' -61.8 NC_003521.1 + 132100 0.66 0.794485
Target:  5'- cUGGAUCGCcuaGUauuugagGCgGCGCAGCGCg -3'
miRNA:   3'- -ACCUGGCGag-CGgg-----UGgUGCGUCGCG- -5'
14274 3' -61.8 NC_003521.1 + 39821 0.66 0.794485
Target:  5'- cGGuccuCCGCcgauggCGCCUGCUugGCcuccGGCGUg -3'
miRNA:   3'- aCCu---GGCGa-----GCGGGUGGugCG----UCGCG- -5'
14274 3' -61.8 NC_003521.1 + 23996 0.66 0.794485
Target:  5'- cGGGCUGCgaccuccUGCgCGCCAUcCGGCGUa -3'
miRNA:   3'- aCCUGGCGa------GCGgGUGGUGcGUCGCG- -5'
14274 3' -61.8 NC_003521.1 + 128455 0.66 0.794485
Target:  5'- gUGGACgagaCGC-CGCagCCGCCGCGU-GCGUa -3'
miRNA:   3'- -ACCUG----GCGaGCG--GGUGGUGCGuCGCG- -5'
14274 3' -61.8 NC_003521.1 + 168608 0.66 0.794485
Target:  5'- aUGGGCUGCUgggCGUgCGCCAucugcuguugcUGCuGCGCc -3'
miRNA:   3'- -ACCUGGCGA---GCGgGUGGU-----------GCGuCGCG- -5'
14274 3' -61.8 NC_003521.1 + 63422 0.66 0.794485
Target:  5'- gGGGaaGCg-GCCCGCCGCGUAuauCGCc -3'
miRNA:   3'- aCCUggCGagCGGGUGGUGCGUc--GCG- -5'
14274 3' -61.8 NC_003521.1 + 156885 0.66 0.794485
Target:  5'- gGcGGCCGCU-GCCCGauggCACGgGGgGCg -3'
miRNA:   3'- aC-CUGGCGAgCGGGUg---GUGCgUCgCG- -5'
14274 3' -61.8 NC_003521.1 + 141993 0.66 0.794485
Target:  5'- cGGGa-GCUgGCCCgcGCCAaGCAGCuGCa -3'
miRNA:   3'- aCCUggCGAgCGGG--UGGUgCGUCG-CG- -5'
14274 3' -61.8 NC_003521.1 + 90173 0.66 0.794485
Target:  5'- cGGagaGCCGCcuUCGucgcgcacgccCCCGCCuGCGCAGCaGCc -3'
miRNA:   3'- aCC---UGGCG--AGC-----------GGGUGG-UGCGUCG-CG- -5'
14274 3' -61.8 NC_003521.1 + 117650 0.66 0.794485
Target:  5'- cGGucccCCGC-CGCcgCCGCCACcucaGCAGCaGCa -3'
miRNA:   3'- aCCu---GGCGaGCG--GGUGGUG----CGUCG-CG- -5'
14274 3' -61.8 NC_003521.1 + 91522 0.66 0.793639
Target:  5'- gGcGGCCGCgucgucgCGCuCCAgCACGUacuugugGGCGCc -3'
miRNA:   3'- aC-CUGGCGa------GCG-GGUgGUGCG-------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.