miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14274 5' -55.5 NC_003521.1 + 135916 0.66 0.970691
Target:  5'- uUGUGCCGGCcucggccacGGCCGcGgGAUgUGCGa -3'
miRNA:   3'- cACAUGGCCGa--------CCGGC-UgCUAgAUGU- -5'
14274 5' -55.5 NC_003521.1 + 205150 0.66 0.970691
Target:  5'- ---gGCCGGgUGGCCGugGA-CUucCAa -3'
miRNA:   3'- cacaUGGCCgACCGGCugCUaGAu-GU- -5'
14274 5' -55.5 NC_003521.1 + 180412 0.66 0.967786
Target:  5'- -gGUGCUGGC-GGCCG-CGAUaCUGg- -3'
miRNA:   3'- caCAUGGCCGaCCGGCuGCUA-GAUgu -5'
14274 5' -55.5 NC_003521.1 + 137528 0.66 0.967786
Target:  5'- -aGUACCGGCgcguggUGGCCuacGACGAg--ACGg -3'
miRNA:   3'- caCAUGGCCG------ACCGG---CUGCUagaUGU- -5'
14274 5' -55.5 NC_003521.1 + 123549 0.66 0.967786
Target:  5'- ---aGCCGGCaccacGGCCGACGAcg-GCGg -3'
miRNA:   3'- cacaUGGCCGa----CCGGCUGCUagaUGU- -5'
14274 5' -55.5 NC_003521.1 + 111569 0.66 0.964682
Target:  5'- -gGUG-CGGCUGaGCCGGCGGguuccggaCUGCGu -3'
miRNA:   3'- caCAUgGCCGAC-CGGCUGCUa-------GAUGU- -5'
14274 5' -55.5 NC_003521.1 + 109350 0.66 0.964682
Target:  5'- ---aGCCGGCgcaggaGGCCGACGAg--GCc -3'
miRNA:   3'- cacaUGGCCGa-----CCGGCUGCUagaUGu -5'
14274 5' -55.5 NC_003521.1 + 169776 0.66 0.961374
Target:  5'- gGUGUGCaCGGUacgccagaGGCUGAUGAagCUGCAg -3'
miRNA:   3'- -CACAUG-GCCGa-------CCGGCUGCUa-GAUGU- -5'
14274 5' -55.5 NC_003521.1 + 54294 0.66 0.961374
Target:  5'- -cGUugCGGCUGGCC-ACGuagaGCAg -3'
miRNA:   3'- caCAugGCCGACCGGcUGCuagaUGU- -5'
14274 5' -55.5 NC_003521.1 + 17769 0.66 0.957858
Target:  5'- -cGUaccGCCGGC-GGCgGACGGUCa--- -3'
miRNA:   3'- caCA---UGGCCGaCCGgCUGCUAGaugu -5'
14274 5' -55.5 NC_003521.1 + 54204 0.66 0.957858
Target:  5'- ---gACCGcuGCUGGCCGGUGGUCcgGCAg -3'
miRNA:   3'- cacaUGGC--CGACCGGCUGCUAGa-UGU- -5'
14274 5' -55.5 NC_003521.1 + 144944 0.67 0.954128
Target:  5'- -cGUcGCCGcGCUGGCucgCGACGAagggCUGCGc -3'
miRNA:   3'- caCA-UGGC-CGACCG---GCUGCUa---GAUGU- -5'
14274 5' -55.5 NC_003521.1 + 423 0.67 0.954128
Target:  5'- uGUGUGCUGGCgaggccaaGCCGGCGGUaaGCc -3'
miRNA:   3'- -CACAUGGCCGac------CGGCUGCUAgaUGu -5'
14274 5' -55.5 NC_003521.1 + 139211 0.67 0.954128
Target:  5'- ---cGCCGGgccCUGGCCGACGuccugagCUACc -3'
miRNA:   3'- cacaUGGCC---GACCGGCUGCua-----GAUGu -5'
14274 5' -55.5 NC_003521.1 + 40745 0.67 0.954128
Target:  5'- uGUGUGCUGGCgaggccaaGCCGGCGGUaaGCc -3'
miRNA:   3'- -CACAUGGCCGac------CGGCUGCUAgaUGu -5'
14274 5' -55.5 NC_003521.1 + 69246 0.67 0.946016
Target:  5'- -gGUGCUGGUgaugauggUGGCCGACGug--GCAa -3'
miRNA:   3'- caCAUGGCCG--------ACCGGCUGCuagaUGU- -5'
14274 5' -55.5 NC_003521.1 + 112781 0.67 0.946016
Target:  5'- aUGUGCCuGCUGGCCGccuacgggcacGCGcUCUGgGa -3'
miRNA:   3'- cACAUGGcCGACCGGC-----------UGCuAGAUgU- -5'
14274 5' -55.5 NC_003521.1 + 172107 0.67 0.941627
Target:  5'- -cGUGCgGGC-GGCCGACGGcgCcACGg -3'
miRNA:   3'- caCAUGgCCGaCCGGCUGCUa-GaUGU- -5'
14274 5' -55.5 NC_003521.1 + 18745 0.67 0.941627
Target:  5'- -cGUGgCGGCggugGcGCCGACGGgucgCUGCu -3'
miRNA:   3'- caCAUgGCCGa---C-CGGCUGCUa---GAUGu -5'
14274 5' -55.5 NC_003521.1 + 56907 0.67 0.939808
Target:  5'- gGUGUugcACCGGUacagcgccgugacGGCCGugGcUCUGCAg -3'
miRNA:   3'- -CACA---UGGCCGa------------CCGGCugCuAGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.