miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14275 3' -61.1 NC_003521.1 + 166216 0.66 0.805273
Target:  5'- uUGGcGCGgcGGCgaGGCGCGC--CGGCCg -3'
miRNA:   3'- gACC-UGC--UCGa-CCGCGCGauGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 177731 0.66 0.805273
Target:  5'- gCUGGA-GGGCgGGCaGCGCgcCGGCg- -3'
miRNA:   3'- -GACCUgCUCGaCCG-CGCGauGCCGga -5'
14275 3' -61.1 NC_003521.1 + 222643 0.66 0.805273
Target:  5'- -aGGGCcGGCaGGCGCGCaGC-GCCUc -3'
miRNA:   3'- gaCCUGcUCGaCCGCGCGaUGcCGGA- -5'
14275 3' -61.1 NC_003521.1 + 127369 0.66 0.805273
Target:  5'- gUGGuGCGcGGCaGGUGCGUgaugaaggGCGGCCa -3'
miRNA:   3'- gACC-UGC-UCGaCCGCGCGa-------UGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 39408 0.66 0.805273
Target:  5'- uUGGAgcCGAGUuugGGCGCcgagaaaaugccGCUGCcGGCCg -3'
miRNA:   3'- gACCU--GCUCGa--CCGCG------------CGAUG-CCGGa -5'
14275 3' -61.1 NC_003521.1 + 197316 0.66 0.800231
Target:  5'- -gGGGCGGcaggcgcugacggauGUUGGC-CGCcGCGGCCa -3'
miRNA:   3'- gaCCUGCU---------------CGACCGcGCGaUGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 116775 0.66 0.796843
Target:  5'- gUGGgccgccgccGCGGcacGCUGGC-CGuCUACGGCCg -3'
miRNA:   3'- gACC---------UGCU---CGACCGcGC-GAUGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 216114 0.66 0.796843
Target:  5'- aCUGGuuGAGCgcGGCGCGga--GGCCg -3'
miRNA:   3'- -GACCugCUCGa-CCGCGCgaugCCGGa -5'
14275 3' -61.1 NC_003521.1 + 76231 0.66 0.796843
Target:  5'- cCUGGGCgcgcacguccucGAGCgugaGGCGCGagaggcgcACGGCCg -3'
miRNA:   3'- -GACCUG------------CUCGa---CCGCGCga------UGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 36773 0.66 0.78828
Target:  5'- aCUGcGGCGA-CUGGCagggccacGCGCUGCGgaGCCg -3'
miRNA:   3'- -GAC-CUGCUcGACCG--------CGCGAUGC--CGGa -5'
14275 3' -61.1 NC_003521.1 + 137476 0.66 0.78828
Target:  5'- gUGGAaGGGCgccGGCGUGUcGCGGCg- -3'
miRNA:   3'- gACCUgCUCGa--CCGCGCGaUGCCGga -5'
14275 3' -61.1 NC_003521.1 + 35225 0.66 0.78828
Target:  5'- -cGGAuCGAGCguccucGGgGCGCgagACGGCa- -3'
miRNA:   3'- gaCCU-GCUCGa-----CCgCGCGa--UGCCGga -5'
14275 3' -61.1 NC_003521.1 + 228960 0.66 0.78828
Target:  5'- -cGGAguccuccucgucCGAGgaGGUGCGCggGCGGCg- -3'
miRNA:   3'- gaCCU------------GCUCgaCCGCGCGa-UGCCGga -5'
14275 3' -61.1 NC_003521.1 + 52370 0.66 0.787417
Target:  5'- -cGGcUGAGCUGGUGCacaguccGCguguCGGCCa -3'
miRNA:   3'- gaCCuGCUCGACCGCG-------CGau--GCCGGa -5'
14275 3' -61.1 NC_003521.1 + 56041 0.66 0.78482
Target:  5'- -aGGGCGucCaGGCGCGCguugccccagaucACGGCCUc -3'
miRNA:   3'- gaCCUGCucGaCCGCGCGa------------UGCCGGA- -5'
14275 3' -61.1 NC_003521.1 + 23779 0.66 0.779592
Target:  5'- gCUGGGCuuuauGUUGGC-CGUgACGGCCUu -3'
miRNA:   3'- -GACCUGcu---CGACCGcGCGaUGCCGGA- -5'
14275 3' -61.1 NC_003521.1 + 213112 0.66 0.779592
Target:  5'- gCUcGACGcGCugggugUGGCGUGgUGCGGCCg -3'
miRNA:   3'- -GAcCUGCuCG------ACCGCGCgAUGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 98231 0.66 0.779592
Target:  5'- gUGGgagGCGGGgaGGCGgGg-GCGGCCa -3'
miRNA:   3'- gACC---UGCUCgaCCGCgCgaUGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 33242 0.66 0.779592
Target:  5'- -cGGcguUGAGCUGGCacacGCGCaGCaGGCCg -3'
miRNA:   3'- gaCCu--GCUCGACCG----CGCGaUG-CCGGa -5'
14275 3' -61.1 NC_003521.1 + 68333 0.66 0.776963
Target:  5'- cCUGGACGAGgauuccuaucccgcCgacGGCGCaccGCUGcCGGCCc -3'
miRNA:   3'- -GACCUGCUC--------------Ga--CCGCG---CGAU-GCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.