miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14275 3' -61.1 NC_003521.1 + 133915 0.69 0.620149
Target:  5'- uUGGACGAGaacgaccucaucCUGGUgGCGCUGC-GCCg -3'
miRNA:   3'- gACCUGCUC------------GACCG-CGCGAUGcCGGa -5'
14275 3' -61.1 NC_003521.1 + 104234 0.71 0.525044
Target:  5'- -aGGACGuggAGCUGcGCGaGCUGCaGGCCUu -3'
miRNA:   3'- gaCCUGC---UCGAC-CGCgCGAUG-CCGGA- -5'
14275 3' -61.1 NC_003521.1 + 43141 0.7 0.530623
Target:  5'- gCUGGGCGuggaggugcacgcGCUGGUgGCGCUGCuGCCg -3'
miRNA:   3'- -GACCUGCu------------CGACCG-CGCGAUGcCGGa -5'
14275 3' -61.1 NC_003521.1 + 28844 0.7 0.553146
Target:  5'- cCUGGACGAcgaGCUgcGGCgGCGCggcACGGUCg -3'
miRNA:   3'- -GACCUGCU---CGA--CCG-CGCGa--UGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 70250 0.7 0.562616
Target:  5'- -aGGGCGAGCUGGUGgGgUGCaGCa- -3'
miRNA:   3'- gaCCUGCUCGACCGCgCgAUGcCGga -5'
14275 3' -61.1 NC_003521.1 + 44334 0.7 0.566417
Target:  5'- gCUGGGCaAGCUGcaccgcauccgcgacGCGCugggGCUGCGGCCc -3'
miRNA:   3'- -GACCUGcUCGAC---------------CGCG----CGAUGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 168550 0.7 0.572129
Target:  5'- -gGcGGCGGcGCUGGCGgGCUGCGGgUa -3'
miRNA:   3'- gaC-CUGCU-CGACCGCgCGAUGCCgGa -5'
14275 3' -61.1 NC_003521.1 + 129997 0.69 0.591264
Target:  5'- gCUGcGCcGGCggcGGCGCGCaACGGCCg -3'
miRNA:   3'- -GACcUGcUCGa--CCGCGCGaUGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 114939 0.69 0.600874
Target:  5'- gCUGGA-GAGCUGcuCGCGCagcgGCGGCUg -3'
miRNA:   3'- -GACCUgCUCGACc-GCGCGa---UGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 58026 0.71 0.510277
Target:  5'- -aGGACGA-CgagGGCGCGCgcguguugcugcugGCGGCCa -3'
miRNA:   3'- gaCCUGCUcGa--CCGCGCGa-------------UGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 43485 0.71 0.497501
Target:  5'- -cGGcCGuGCUGGC-CGCgGCGGCCa -3'
miRNA:   3'- gaCCuGCuCGACCGcGCGaUGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 180388 0.72 0.453123
Target:  5'- aCUGGGCGccggaguacuGCUGGUgGUGCUgGCGGCCg -3'
miRNA:   3'- -GACCUGCu---------CGACCG-CGCGA-UGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 91673 0.78 0.21405
Target:  5'- cCUGGcgcauuccgcaGCGGGCUccugGGCGUGCUGCGGUCUg -3'
miRNA:   3'- -GACC-----------UGCUCGA----CCGCGCGAUGCCGGA- -5'
14275 3' -61.1 NC_003521.1 + 145960 0.75 0.289918
Target:  5'- gCUGGGCcgccucaacaucuauGAGCUGGCGCGCUucccGCuGCCg -3'
miRNA:   3'- -GACCUG---------------CUCGACCGCGCGA----UGcCGGa -5'
14275 3' -61.1 NC_003521.1 + 202469 0.75 0.293766
Target:  5'- gCUGGACGAGCUGG-GUGCcgucuuCGGCUa -3'
miRNA:   3'- -GACCUGCUCGACCgCGCGau----GCCGGa -5'
14275 3' -61.1 NC_003521.1 + 144278 0.74 0.327383
Target:  5'- gCUGGGCGAGCacGGCGacuCGCUGCuGCCg -3'
miRNA:   3'- -GACCUGCUCGa-CCGC---GCGAUGcCGGa -5'
14275 3' -61.1 NC_003521.1 + 144063 0.74 0.363767
Target:  5'- aUGGcCGAGCUGGCgGCGCUG-GGCa- -3'
miRNA:   3'- gACCuGCUCGACCG-CGCGAUgCCGga -5'
14275 3' -61.1 NC_003521.1 + 58812 0.73 0.402857
Target:  5'- -cGGucuCGAGCaGGCaGCGCgugGCGGCCg -3'
miRNA:   3'- gaCCu--GCUCGaCCG-CGCGa--UGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 239229 0.72 0.435982
Target:  5'- gCUGGugGAugUGGCGCuGC-ACGGCCg -3'
miRNA:   3'- -GACCugCUcgACCGCG-CGaUGCCGGa -5'
14275 3' -61.1 NC_003521.1 + 43103 0.72 0.453123
Target:  5'- -cGcGACGAGCUGaccaaGCGCUGCGGCg- -3'
miRNA:   3'- gaC-CUGCUCGACcg---CGCGAUGCCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.