miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14275 5' -57.3 NC_003521.1 + 162574 0.66 0.937806
Target:  5'- aCGGGcUUCAgcgCU-CUGCCGGCUGCGGu -3'
miRNA:   3'- -GCUC-AGGUa--GAuGGCGGUCGGCGUCu -5'
14275 5' -57.3 NC_003521.1 + 112772 0.66 0.937806
Target:  5'- gGAGccgCCAUgUGCCuGCUGGCCGCc-- -3'
miRNA:   3'- gCUCa--GGUAgAUGG-CGGUCGGCGucu -5'
14275 5' -57.3 NC_003521.1 + 82622 0.66 0.937806
Target:  5'- gGAGcUCCAUacacGCCGCCGGaggagggcguCCGCAGc -3'
miRNA:   3'- gCUC-AGGUAga--UGGCGGUC----------GGCGUCu -5'
14275 5' -57.3 NC_003521.1 + 30072 0.66 0.937806
Target:  5'- uGuG-CCGUCc-CCGCCGGCCGCu-- -3'
miRNA:   3'- gCuCaGGUAGauGGCGGUCGGCGucu -5'
14275 5' -57.3 NC_003521.1 + 18710 0.66 0.937806
Target:  5'- gCGA-UCCGgcuguggCUGCCGCUGGCgGCGGc -3'
miRNA:   3'- -GCUcAGGUa------GAUGGCGGUCGgCGUCu -5'
14275 5' -57.3 NC_003521.1 + 57813 0.66 0.937806
Target:  5'- aCGAcGcCCAgCUGCCGCaugaagcuCGGCCGguGAc -3'
miRNA:   3'- -GCU-CaGGUaGAUGGCG--------GUCGGCguCU- -5'
14275 5' -57.3 NC_003521.1 + 161004 0.66 0.937342
Target:  5'- aGAGUCCcgaccUCUGucagguuCCGCUcGCCGCGGc -3'
miRNA:   3'- gCUCAGGu----AGAU-------GGCGGuCGGCGUCu -5'
14275 5' -57.3 NC_003521.1 + 77254 0.66 0.93307
Target:  5'- gGGGUCCAcgggguacUC-GCCGCCGgGCaccaGCAGGg -3'
miRNA:   3'- gCUCAGGU--------AGaUGGCGGU-CGg---CGUCU- -5'
14275 5' -57.3 NC_003521.1 + 136664 0.66 0.93307
Target:  5'- gCGA--CCcgC-GCCGCC-GCCGCAGAg -3'
miRNA:   3'- -GCUcaGGuaGaUGGCGGuCGGCGUCU- -5'
14275 5' -57.3 NC_003521.1 + 76595 0.66 0.93307
Target:  5'- cCGAG-CC-UCcACCGuCCAGCCGCc-- -3'
miRNA:   3'- -GCUCaGGuAGaUGGC-GGUCGGCGucu -5'
14275 5' -57.3 NC_003521.1 + 224297 0.66 0.93307
Target:  5'- aGGGUCCGUUgcgcuCCaGCCGagccgagcGCCGCAGc -3'
miRNA:   3'- gCUCAGGUAGau---GG-CGGU--------CGGCGUCu -5'
14275 5' -57.3 NC_003521.1 + 128220 0.66 0.93307
Target:  5'- aCGaAGUCCAUCUucuggAUgGCgCGGUCGCGGu -3'
miRNA:   3'- -GC-UCAGGUAGA-----UGgCG-GUCGGCGUCu -5'
14275 5' -57.3 NC_003521.1 + 12503 0.66 0.932584
Target:  5'- uGGGUCUcaugaaaAUCUACCagGCCGGCCgGCGu- -3'
miRNA:   3'- gCUCAGG-------UAGAUGG--CGGUCGG-CGUcu -5'
14275 5' -57.3 NC_003521.1 + 87274 0.66 0.931605
Target:  5'- uGAGUCgCAUCUugCGgCAGUaguccaggaugcgaUGCAGGc -3'
miRNA:   3'- gCUCAG-GUAGAugGCgGUCG--------------GCGUCU- -5'
14275 5' -57.3 NC_003521.1 + 197382 0.66 0.928112
Target:  5'- aGAGuUCCAgg-GCCGCC-GCCGCc-- -3'
miRNA:   3'- gCUC-AGGUagaUGGCGGuCGGCGucu -5'
14275 5' -57.3 NC_003521.1 + 213290 0.66 0.928112
Target:  5'- gGAGaCCGUCUACgccaccgugggCGCCucgGGCCGCAc- -3'
miRNA:   3'- gCUCaGGUAGAUG-----------GCGG---UCGGCGUcu -5'
14275 5' -57.3 NC_003521.1 + 212159 0.66 0.928112
Target:  5'- cCGuGUCCAUgUGCCGCgCcuuGCC-CAGGg -3'
miRNA:   3'- -GCuCAGGUAgAUGGCG-Gu--CGGcGUCU- -5'
14275 5' -57.3 NC_003521.1 + 42362 0.66 0.928112
Target:  5'- -aAGcCUGUCgacACCGCCAGCCGaCGGc -3'
miRNA:   3'- gcUCaGGUAGa--UGGCGGUCGGC-GUCu -5'
14275 5' -57.3 NC_003521.1 + 77078 0.66 0.926581
Target:  5'- uGAGcgCCGcugUUGCCGCCGGCgccgcucaucccgaCGCAGGa -3'
miRNA:   3'- gCUCa-GGUa--GAUGGCGGUCG--------------GCGUCU- -5'
14275 5' -57.3 NC_003521.1 + 174045 0.66 0.922933
Target:  5'- gCGAaccGUCCGUCUggGCCGgCGGCaucaccCGCGGGa -3'
miRNA:   3'- -GCU---CAGGUAGA--UGGCgGUCG------GCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.