miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14275 5' -57.3 NC_003521.1 + 2873 0.7 0.758762
Target:  5'- aCGAGUCCAUCUggguauuggGCa-CCAGUCGCAa- -3'
miRNA:   3'- -GCUCAGGUAGA---------UGgcGGUCGGCGUcu -5'
14275 5' -57.3 NC_003521.1 + 12503 0.66 0.932584
Target:  5'- uGGGUCUcaugaaaAUCUACCagGCCGGCCgGCGu- -3'
miRNA:   3'- gCUCAGG-------UAGAUGG--CGGUCGG-CGUcu -5'
14275 5' -57.3 NC_003521.1 + 15585 0.67 0.89374
Target:  5'- uGAGUUCcUCUACUGCCAuaCGCGc- -3'
miRNA:   3'- gCUCAGGuAGAUGGCGGUcgGCGUcu -5'
14275 5' -57.3 NC_003521.1 + 15994 1.09 0.003817
Target:  5'- cCGAGUCCAUCUACCGCCAGCCGCAGAc -3'
miRNA:   3'- -GCUCAGGUAGAUGGCGGUCGGCGUCU- -5'
14275 5' -57.3 NC_003521.1 + 16729 0.71 0.692383
Target:  5'- gCGAGUUCGgcgACCGCCGGCgCGCGc- -3'
miRNA:   3'- -GCUCAGGUagaUGGCGGUCG-GCGUcu -5'
14275 5' -57.3 NC_003521.1 + 17756 0.71 0.730772
Target:  5'- cCGGGgaacuggCCGU--ACCGCCGGCgGCGGAc -3'
miRNA:   3'- -GCUCa------GGUAgaUGGCGGUCGgCGUCU- -5'
14275 5' -57.3 NC_003521.1 + 17983 0.73 0.613859
Target:  5'- gCGAGUaCGUgUAUCGCCAcCCGCAGAc -3'
miRNA:   3'- -GCUCAgGUAgAUGGCGGUcGGCGUCU- -5'
14275 5' -57.3 NC_003521.1 + 18710 0.66 0.937806
Target:  5'- gCGA-UCCGgcuguggCUGCCGCUGGCgGCGGc -3'
miRNA:   3'- -GCUcAGGUa------GAUGGCGGUCGgCGUCu -5'
14275 5' -57.3 NC_003521.1 + 19466 0.68 0.866563
Target:  5'- aCGAGgaccccUCC-UCUACCGCCgcaaAGCgGCAGc -3'
miRNA:   3'- -GCUC------AGGuAGAUGGCGG----UCGgCGUCu -5'
14275 5' -57.3 NC_003521.1 + 25807 0.68 0.836269
Target:  5'- ----aCCAUCaGCUGCCAGCCGUAc- -3'
miRNA:   3'- gcucaGGUAGaUGGCGGUCGGCGUcu -5'
14275 5' -57.3 NC_003521.1 + 28560 0.66 0.922933
Target:  5'- ---cUCUAcCUACCGCCGGCCaccgacuacGCGGAc -3'
miRNA:   3'- gcucAGGUaGAUGGCGGUCGG---------CGUCU- -5'
14275 5' -57.3 NC_003521.1 + 29230 0.69 0.785818
Target:  5'- gGAGaUCC-UCUACUGggccuCCAGCCGCGGc -3'
miRNA:   3'- gCUC-AGGuAGAUGGC-----GGUCGGCGUCu -5'
14275 5' -57.3 NC_003521.1 + 30072 0.66 0.937806
Target:  5'- uGuG-CCGUCc-CCGCCGGCCGCu-- -3'
miRNA:   3'- gCuCaGGUAGauGGCGGUCGGCGucu -5'
14275 5' -57.3 NC_003521.1 + 31949 0.7 0.746735
Target:  5'- gGGGUCCAggaacaggcacauggUGCCGuCCAGCCGCAu- -3'
miRNA:   3'- gCUCAGGUag-------------AUGGC-GGUCGGCGUcu -5'
14275 5' -57.3 NC_003521.1 + 42362 0.66 0.928112
Target:  5'- -aAGcCUGUCgacACCGCCAGCCGaCGGc -3'
miRNA:   3'- gcUCaGGUAGa--UGGCGGUCGGC-GUCu -5'
14275 5' -57.3 NC_003521.1 + 42582 0.67 0.887254
Target:  5'- cCGAGUCUccuuuucuccuaGUCUauuaccacgGCCGCCGGCgGCGc- -3'
miRNA:   3'- -GCUCAGG------------UAGA---------UGGCGGUCGgCGUcu -5'
14275 5' -57.3 NC_003521.1 + 43826 0.8 0.253889
Target:  5'- cCGGGUCag-CcGCCGCCGGCCGCGGGc -3'
miRNA:   3'- -GCUCAGguaGaUGGCGGUCGGCGUCU- -5'
14275 5' -57.3 NC_003521.1 + 46798 0.67 0.893101
Target:  5'- uGAGuUCCAuggUCUggaugacGCCGCC-GCCGguGAc -3'
miRNA:   3'- gCUC-AGGU---AGA-------UGGCGGuCGGCguCU- -5'
14275 5' -57.3 NC_003521.1 + 49564 0.67 0.887254
Target:  5'- aGAGcaCCAcCUGCCGCgugGGCCGCGGc -3'
miRNA:   3'- gCUCa-GGUaGAUGGCGg--UCGGCGUCu -5'
14275 5' -57.3 NC_003521.1 + 49736 0.68 0.866563
Target:  5'- aCGAGacgcagCCcgCcGCCGCCAccacggucGCCGCGGGa -3'
miRNA:   3'- -GCUCa-----GGuaGaUGGCGGU--------CGGCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.