miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14276 3' -60.5 NC_003521.1 + 187627 0.66 0.868539
Target:  5'- gCGAgccGGGC-CGcGCGCCGCuGGCCa-- -3'
miRNA:   3'- gGCU---CCCGaGCaUGCGGUG-CCGGcuc -5'
14276 3' -60.5 NC_003521.1 + 238412 0.66 0.868539
Target:  5'- gCGGGGccGCUCccaGUGC-UCGCGGUCGAGg -3'
miRNA:   3'- gGCUCC--CGAG---CAUGcGGUGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 127250 0.66 0.868539
Target:  5'- -aGAGcGGCUCGUcgGCGuCCAUGGCg--- -3'
miRNA:   3'- ggCUC-CCGAGCA--UGC-GGUGCCGgcuc -5'
14276 3' -60.5 NC_003521.1 + 155697 0.66 0.868539
Target:  5'- gCCGAGGGaggcuaCGUGCcgcccgccgcuGCCGCcGCCGAu -3'
miRNA:   3'- -GGCUCCCga----GCAUG-----------CGGUGcCGGCUc -5'
14276 3' -60.5 NC_003521.1 + 60705 0.66 0.868539
Target:  5'- cCCGGGGGCggcgCGggucgcaccACGCCGCuGCCc-- -3'
miRNA:   3'- -GGCUCCCGa---GCa--------UGCGGUGcCGGcuc -5'
14276 3' -60.5 NC_003521.1 + 89626 0.66 0.868539
Target:  5'- aCCGu-GGUg-GUGacCGUCGCGGCCGAGg -3'
miRNA:   3'- -GGCucCCGagCAU--GCGGUGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 148601 0.66 0.868539
Target:  5'- cCCGucGGGCccucacagcgcUCGU-CG-CGCGGCCGGGc -3'
miRNA:   3'- -GGCu-CCCG-----------AGCAuGCgGUGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 203002 0.66 0.868539
Target:  5'- uCCGGGcGGCUCGccCGCCAagacggguuCGGCgGuGa -3'
miRNA:   3'- -GGCUC-CCGAGCauGCGGU---------GCCGgCuC- -5'
14276 3' -60.5 NC_003521.1 + 49810 0.66 0.868539
Target:  5'- cCCGAauggcuGGGCgccgugcaGUGCGCCgugcagACGGCCGu- -3'
miRNA:   3'- -GGCU------CCCGag------CAUGCGG------UGCCGGCuc -5'
14276 3' -60.5 NC_003521.1 + 38184 0.66 0.868539
Target:  5'- gCGGGGccGCUCccaGUGC-UCGCGGUCGAGg -3'
miRNA:   3'- gGCUCC--CGAG---CAUGcGGUGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 111208 0.66 0.86785
Target:  5'- gCCGGGcGGCcggcgacUCGacuauuagaGCGUCGCGGCCGGc -3'
miRNA:   3'- -GGCUC-CCG-------AGCa--------UGCGGUGCCGGCUc -5'
14276 3' -60.5 NC_003521.1 + 8541 0.66 0.867158
Target:  5'- aCCGuGGGCgCGacgacauccacCGUCACGGuCCGAGc -3'
miRNA:   3'- -GGCuCCCGaGCau---------GCGGUGCC-GGCUC- -5'
14276 3' -60.5 NC_003521.1 + 171632 0.66 0.861562
Target:  5'- gCCGAcgucGGGUaUGUcuagcGCGCCGCGGCgGGc -3'
miRNA:   3'- -GGCU----CCCGaGCA-----UGCGGUGCCGgCUc -5'
14276 3' -60.5 NC_003521.1 + 169540 0.66 0.861562
Target:  5'- cCCaGGGGCcCGU--GCCGCGGCCc-- -3'
miRNA:   3'- -GGcUCCCGaGCAugCGGUGCCGGcuc -5'
14276 3' -60.5 NC_003521.1 + 16630 0.66 0.861562
Target:  5'- aCCGcuGGCUCuGUcgcgGCGaCCGCuuucgGGCCGAGa -3'
miRNA:   3'- -GGCucCCGAG-CA----UGC-GGUG-----CCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 54622 0.66 0.861561
Target:  5'- gUCGAGG--UC-UACGUgCACGGCCGAGu -3'
miRNA:   3'- -GGCUCCcgAGcAUGCG-GUGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 106003 0.66 0.861561
Target:  5'- gCGGGGGCaCGUucaugaGCuGCCAgGGCuCGGGc -3'
miRNA:   3'- gGCUCCCGaGCA------UG-CGGUgCCG-GCUC- -5'
14276 3' -60.5 NC_003521.1 + 223458 0.66 0.861561
Target:  5'- cUCGAgucuGGGCcgccgCGccgGCGUCACGGcCCGGGa -3'
miRNA:   3'- -GGCU----CCCGa----GCa--UGCGGUGCC-GGCUC- -5'
14276 3' -60.5 NC_003521.1 + 86212 0.66 0.861561
Target:  5'- gCGaAGGGCggCGgcACGCCGgCGGCCuuGAGc -3'
miRNA:   3'- gGC-UCCCGa-GCa-UGCGGU-GCCGG--CUC- -5'
14276 3' -60.5 NC_003521.1 + 18926 0.66 0.860854
Target:  5'- cCCGAGGuuUCGauucacguccgccUGUGCUACuGGCCGAGa -3'
miRNA:   3'- -GGCUCCcgAGC-------------AUGCGGUG-CCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.