miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14276 3' -60.5 NC_003521.1 + 91078 0.66 0.847077
Target:  5'- uCCGgacaacgcaacaGGGGCcCGUcuGCGCCugcgcCGGUCGGGg -3'
miRNA:   3'- -GGC------------UCCCGaGCA--UGCGGu----GCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 36808 0.66 0.847077
Target:  5'- uUCGGGcaGGC-CGUgaucacGCGCCACGgGCCGGc -3'
miRNA:   3'- -GGCUC--CCGaGCA------UGCGGUGC-CGGCUc -5'
14276 3' -60.5 NC_003521.1 + 118902 0.66 0.83958
Target:  5'- aUGAGGuccucgccCUCGUcgGCGCCGCGGCgUGGGc -3'
miRNA:   3'- gGCUCCc-------GAGCA--UGCGGUGCCG-GCUC- -5'
14276 3' -60.5 NC_003521.1 + 142341 0.66 0.83958
Target:  5'- gCGAGGccGCcgccaCGgcCGCCGCGGCCGc- -3'
miRNA:   3'- gGCUCC--CGa----GCauGCGGUGCCGGCuc -5'
14276 3' -60.5 NC_003521.1 + 102849 0.66 0.83958
Target:  5'- gCC-AGGGCgcccguggCGUAgGUCugGGCCGuGc -3'
miRNA:   3'- -GGcUCCCGa-------GCAUgCGGugCCGGCuC- -5'
14276 3' -60.5 NC_003521.1 + 86212 0.66 0.861561
Target:  5'- gCGaAGGGCggCGgcACGCCGgCGGCCuuGAGc -3'
miRNA:   3'- gGC-UCCCGa-GCa-UGCGGU-GCCGG--CUC- -5'
14276 3' -60.5 NC_003521.1 + 223458 0.66 0.861561
Target:  5'- cUCGAgucuGGGCcgccgCGccgGCGUCACGGcCCGGGa -3'
miRNA:   3'- -GGCU----CCCGa----GCa--UGCGGUGCC-GGCUC- -5'
14276 3' -60.5 NC_003521.1 + 118208 0.66 0.847077
Target:  5'- gCCGAGcGCgCGgcCGCCGCcgucGCCGGGg -3'
miRNA:   3'- -GGCUCcCGaGCauGCGGUGc---CGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 155697 0.66 0.868539
Target:  5'- gCCGAGGGaggcuaCGUGCcgcccgccgcuGCCGCcGCCGAu -3'
miRNA:   3'- -GGCUCCCga----GCAUG-----------CGGUGcCGGCUc -5'
14276 3' -60.5 NC_003521.1 + 149762 0.66 0.83958
Target:  5'- gCGAGGGCggccgcgCGguacgccucaACGCCACGGCg--- -3'
miRNA:   3'- gGCUCCCGa------GCa---------UGCGGUGCCGgcuc -5'
14276 3' -60.5 NC_003521.1 + 223396 0.66 0.83958
Target:  5'- cCCGAcgcGGGC-CGUgugGCGCCcCGGCgCGGc -3'
miRNA:   3'- -GGCU---CCCGaGCA---UGCGGuGCCG-GCUc -5'
14276 3' -60.5 NC_003521.1 + 43992 0.66 0.854406
Target:  5'- cUCG-GGGUUCGUGgGCCugcucaaccACGGCCu-- -3'
miRNA:   3'- -GGCuCCCGAGCAUgCGG---------UGCCGGcuc -5'
14276 3' -60.5 NC_003521.1 + 89626 0.66 0.868539
Target:  5'- aCCGu-GGUg-GUGacCGUCGCGGCCGAGg -3'
miRNA:   3'- -GGCucCCGagCAU--GCGGUGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 238412 0.66 0.868539
Target:  5'- gCGGGGccGCUCccaGUGC-UCGCGGUCGAGg -3'
miRNA:   3'- gGCUCC--CGAG---CAUGcGGUGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 106003 0.66 0.861561
Target:  5'- gCGGGGGCaCGUucaugaGCuGCCAgGGCuCGGGc -3'
miRNA:   3'- gGCUCCCGaGCA------UG-CGGUgCCG-GCUC- -5'
14276 3' -60.5 NC_003521.1 + 127250 0.66 0.868539
Target:  5'- -aGAGcGGCUCGUcgGCGuCCAUGGCg--- -3'
miRNA:   3'- ggCUC-CCGAGCA--UGC-GGUGCCGgcuc -5'
14276 3' -60.5 NC_003521.1 + 13700 0.66 0.831921
Target:  5'- gCGAGuGCUuucgagCGcUGCGCCAgGGCUGGGa -3'
miRNA:   3'- gGCUCcCGA------GC-AUGCGGUgCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 54622 0.66 0.861561
Target:  5'- gUCGAGG--UC-UACGUgCACGGCCGAGu -3'
miRNA:   3'- -GGCUCCcgAGcAUGCG-GUGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 60705 0.66 0.868539
Target:  5'- cCCGGGGGCggcgCGggucgcaccACGCCGCuGCCc-- -3'
miRNA:   3'- -GGCUCCCGa---GCa--------UGCGGUGcCGGcuc -5'
14276 3' -60.5 NC_003521.1 + 148601 0.66 0.868539
Target:  5'- cCCGucGGGCccucacagcgcUCGU-CG-CGCGGCCGGGc -3'
miRNA:   3'- -GGCu-CCCG-----------AGCAuGCgGUGCCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.