miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14276 3' -60.5 NC_003521.1 + 14537 1.09 0.002339
Target:  5'- cCCGAGGGCUCGUACGCCACGGCCGAGc -3'
miRNA:   3'- -GGCUCCCGAGCAUGCGGUGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 99954 0.77 0.308713
Target:  5'- -gGGGGGCggCG-GCGCCuCGGCCGAGa -3'
miRNA:   3'- ggCUCCCGa-GCaUGCGGuGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 4319 0.75 0.360408
Target:  5'- gCCGGGGGCUCGaccguccaugccugGCGCCACcGCCGc- -3'
miRNA:   3'- -GGCUCCCGAGCa-------------UGCGGUGcCGGCuc -5'
14276 3' -60.5 NC_003521.1 + 113366 0.74 0.422738
Target:  5'- gCCGGGGGCgaggaggaggguuaCGgcggACGCCGCGGgCGGGu -3'
miRNA:   3'- -GGCUCCCGa-------------GCa---UGCGGUGCCgGCUC- -5'
14276 3' -60.5 NC_003521.1 + 95085 0.74 0.444346
Target:  5'- gCGcaGGGGCUCGgGCGCCuugaGCGGCCGc- -3'
miRNA:   3'- gGC--UCCCGAGCaUGCGG----UGCCGGCuc -5'
14276 3' -60.5 NC_003521.1 + 123339 0.73 0.478755
Target:  5'- aCCGAcGGCcCcaGCGCCGCGGCCGuGg -3'
miRNA:   3'- -GGCUcCCGaGcaUGCGGUGCCGGCuC- -5'
14276 3' -60.5 NC_003521.1 + 80784 0.73 0.487563
Target:  5'- uCCGAGGaugauCUC--ACGCCACGGCaCGAGa -3'
miRNA:   3'- -GGCUCCc----GAGcaUGCGGUGCCG-GCUC- -5'
14276 3' -60.5 NC_003521.1 + 58963 0.73 0.487563
Target:  5'- gCCGAGGGgUCGUGCGUgGCGaaucaGCCGc- -3'
miRNA:   3'- -GGCUCCCgAGCAUGCGgUGC-----CGGCuc -5'
14276 3' -60.5 NC_003521.1 + 76764 0.73 0.496445
Target:  5'- uCCGAGGcGaC-CGU-CGCCGUGGCCGAGg -3'
miRNA:   3'- -GGCUCC-C-GaGCAuGCGGUGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 138016 0.72 0.514423
Target:  5'- gUCGAGGuGCgCGUGCGUCGCuGCCGGc -3'
miRNA:   3'- -GGCUCC-CGaGCAUGCGGUGcCGGCUc -5'
14276 3' -60.5 NC_003521.1 + 98890 0.72 0.532661
Target:  5'- -aGGGGGCgcCGU-CGUCGCGGCgGAGa -3'
miRNA:   3'- ggCUCCCGa-GCAuGCGGUGCCGgCUC- -5'
14276 3' -60.5 NC_003521.1 + 43844 0.72 0.532661
Target:  5'- gCCGcGGGCcCGUcacagGCGCCcCGGCCGGc -3'
miRNA:   3'- -GGCuCCCGaGCA-----UGCGGuGCCGGCUc -5'
14276 3' -60.5 NC_003521.1 + 56461 0.72 0.532661
Target:  5'- uCCGAGaGGCgcc-GCGCCACGGCCcgcccgaaGAGg -3'
miRNA:   3'- -GGCUC-CCGagcaUGCGGUGCCGG--------CUC- -5'
14276 3' -60.5 NC_003521.1 + 5314 0.72 0.541867
Target:  5'- gCGGGGGCggCGUGCcCCGCcGGCCGcGa -3'
miRNA:   3'- gGCUCCCGa-GCAUGcGGUG-CCGGCuC- -5'
14276 3' -60.5 NC_003521.1 + 123224 0.72 0.541867
Target:  5'- aCGGGGGCggcgguagguggUCGUaGCGCCGCGcccaguagacGCCGGGa -3'
miRNA:   3'- gGCUCCCG------------AGCA-UGCGGUGC----------CGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 105816 0.72 0.541867
Target:  5'- aCCGAgaaGGGCg---ACGCCACGGCCu-- -3'
miRNA:   3'- -GGCU---CCCGagcaUGCGGUGCCGGcuc -5'
14276 3' -60.5 NC_003521.1 + 53148 0.72 0.541867
Target:  5'- cCCGAGGGCgCGUAacaGUacaCGCGGCCGc- -3'
miRNA:   3'- -GGCUCCCGaGCAUg--CG---GUGCCGGCuc -5'
14276 3' -60.5 NC_003521.1 + 166449 0.72 0.551125
Target:  5'- aUCGAGGGCgagcCGU-CGCCGCacuGGCCGuAGc -3'
miRNA:   3'- -GGCUCCCGa---GCAuGCGGUG---CCGGC-UC- -5'
14276 3' -60.5 NC_003521.1 + 81096 0.72 0.551125
Target:  5'- gCGAuGGGCUUGU-CGUagAUGGCCGAGa -3'
miRNA:   3'- gGCU-CCCGAGCAuGCGg-UGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 195412 0.72 0.551126
Target:  5'- gCCGAGGaGgUgG-AgGCCACGGCCGAc -3'
miRNA:   3'- -GGCUCC-CgAgCaUgCGGUGCCGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.