miRNA display CGI


Results 21 - 40 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14276 3' -60.5 NC_003521.1 + 236253 0.66 0.854406
Target:  5'- aCCGGaGGCcggCGUGUGCCcCGGCCGuAGu -3'
miRNA:   3'- -GGCUcCCGa--GCAUGCGGuGCCGGC-UC- -5'
14276 3' -60.5 NC_003521.1 + 54332 0.66 0.854406
Target:  5'- cCCGAcgGGGCUCu--CGcCCugGGCCa-- -3'
miRNA:   3'- -GGCU--CCCGAGcauGC-GGugCCGGcuc -5'
14276 3' -60.5 NC_003521.1 + 43992 0.66 0.854406
Target:  5'- cUCG-GGGUUCGUGgGCCugcucaaccACGGCCu-- -3'
miRNA:   3'- -GGCuCCCGAGCAUgCGG---------UGCCGGcuc -5'
14276 3' -60.5 NC_003521.1 + 167164 0.66 0.854406
Target:  5'- gCCucGGGCgucUUGgagGCgGCCGCGGCgGAGg -3'
miRNA:   3'- -GGcuCCCG---AGCa--UG-CGGUGCCGgCUC- -5'
14276 3' -60.5 NC_003521.1 + 90086 0.66 0.854406
Target:  5'- uCCGGGcagccGGCccaggaCGUgGC-CCACGGCCGAGa -3'
miRNA:   3'- -GGCUC-----CCGa-----GCA-UGcGGUGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 221307 0.66 0.854406
Target:  5'- uCCGAGGGC-CaGUAguccCGCgACaGCUGAGa -3'
miRNA:   3'- -GGCUCCCGaG-CAU----GCGgUGcCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 236484 0.66 0.854406
Target:  5'- aCCGccGGCggCGgugGCGCCaggcauggACGGUCGAGc -3'
miRNA:   3'- -GGCucCCGa-GCa--UGCGG--------UGCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 127976 0.66 0.852954
Target:  5'- gCUGGGGcaGCUCGgccaugacgccCGCCACGGaauCCGGGg -3'
miRNA:   3'- -GGCUCC--CGAGCau---------GCGGUGCC---GGCUC- -5'
14276 3' -60.5 NC_003521.1 + 141196 0.66 0.847077
Target:  5'- gCGGGuGGC-CGUgGCGCUGCGccGCCGGGc -3'
miRNA:   3'- gGCUC-CCGaGCA-UGCGGUGC--CGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 36808 0.66 0.847077
Target:  5'- uUCGGGcaGGC-CGUgaucacGCGCCACGgGCCGGc -3'
miRNA:   3'- -GGCUC--CCGaGCA------UGCGGUGC-CGGCUc -5'
14276 3' -60.5 NC_003521.1 + 91078 0.66 0.847077
Target:  5'- uCCGgacaacgcaacaGGGGCcCGUcuGCGCCugcgcCGGUCGGGg -3'
miRNA:   3'- -GGC------------UCCCGaGCA--UGCGGu----GCCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 87780 0.66 0.847077
Target:  5'- cCUGGGGGCcgccUCGUcggucucggGCgGCCugGGCCagGAGc -3'
miRNA:   3'- -GGCUCCCG----AGCA---------UG-CGGugCCGG--CUC- -5'
14276 3' -60.5 NC_003521.1 + 100258 0.66 0.847077
Target:  5'- uCCucGGGCg---GCGCCugGGUgGAGa -3'
miRNA:   3'- -GGcuCCCGagcaUGCGGugCCGgCUC- -5'
14276 3' -60.5 NC_003521.1 + 118208 0.66 0.847077
Target:  5'- gCCGAGcGCgCGgcCGCCGCcgucGCCGGGg -3'
miRNA:   3'- -GGCUCcCGaGCauGCGGUGc---CGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 101001 0.66 0.847077
Target:  5'- aCCGAcuucaagaaGuGGCUCGacggcggcuuCGCCACcGCCGAGg -3'
miRNA:   3'- -GGCU---------C-CCGAGCau--------GCGGUGcCGGCUC- -5'
14276 3' -60.5 NC_003521.1 + 162222 0.66 0.847077
Target:  5'- aCGGGGGgUgGUaGCGCCgACGGCgcuggCGGGg -3'
miRNA:   3'- gGCUCCCgAgCA-UGCGG-UGCCG-----GCUC- -5'
14276 3' -60.5 NC_003521.1 + 170661 0.66 0.842598
Target:  5'- aCGAGuGGaCUCGUGauaggcagccgcgcuCGCCGCaGCuCGAGg -3'
miRNA:   3'- gGCUC-CC-GAGCAU---------------GCGGUGcCG-GCUC- -5'
14276 3' -60.5 NC_003521.1 + 123525 0.66 0.83958
Target:  5'- uCCGucguGGGGCagCGUgaggggagccgGCaCCACGGCCGAc -3'
miRNA:   3'- -GGC----UCCCGa-GCA-----------UGcGGUGCCGGCUc -5'
14276 3' -60.5 NC_003521.1 + 102849 0.66 0.83958
Target:  5'- gCC-AGGGCgcccguggCGUAgGUCugGGCCGuGc -3'
miRNA:   3'- -GGcUCCCGa-------GCAUgCGGugCCGGCuC- -5'
14276 3' -60.5 NC_003521.1 + 174747 0.66 0.83958
Target:  5'- aCGcAGGGCUCGcucgGCuGCCACGuaCGGc -3'
miRNA:   3'- gGC-UCCCGAGCa---UG-CGGUGCcgGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.