miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14276 5' -54.6 NC_003521.1 + 23835 0.66 0.977522
Target:  5'- ---cGUGGCGgGAGGCcgaccUGCugGCGCUg -3'
miRNA:   3'- uugaCGCUGCaCUUCG-----ACGugUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 123180 0.66 0.977522
Target:  5'- cGGCgGCGGCGgggGAccguaGGCcGCAUacgGCGCCg -3'
miRNA:   3'- -UUGaCGCUGCa--CU-----UCGaCGUG---UGCGG- -5'
14276 5' -54.6 NC_003521.1 + 196951 0.66 0.977522
Target:  5'- uAGCguggGCGACGgcccgGGAGCcgGCcgGgGCGCCu -3'
miRNA:   3'- -UUGa---CGCUGCa----CUUCGa-CG--UgUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 137972 0.66 0.977522
Target:  5'- --aUGcCGACGUGGugcGCUGUguccGCGCGCa -3'
miRNA:   3'- uugAC-GCUGCACUu--CGACG----UGUGCGg -5'
14276 5' -54.6 NC_003521.1 + 86310 0.66 0.977522
Target:  5'- aAACUG-GGCGUGAuuCUG-GCACGUCa -3'
miRNA:   3'- -UUGACgCUGCACUucGACgUGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 31420 0.66 0.977522
Target:  5'- --aUGCuGGCGUGcAGCaggcggaugaUGCGCAgCGCCa -3'
miRNA:   3'- uugACG-CUGCACuUCG----------ACGUGU-GCGG- -5'
14276 5' -54.6 NC_003521.1 + 113692 0.66 0.977522
Target:  5'- -uCUGCGcCGccUGGAGgUGCACgACGCg -3'
miRNA:   3'- uuGACGCuGC--ACUUCgACGUG-UGCGg -5'
14276 5' -54.6 NC_003521.1 + 151753 0.66 0.977522
Target:  5'- ---aGCG-CGUGAcgaucuccaggcAGCUGUgGCGCGCCu -3'
miRNA:   3'- uugaCGCuGCACU------------UCGACG-UGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 70146 0.66 0.977522
Target:  5'- gAGCUGCGGCGagcGcGGCUGCcuauCACGaguCCa -3'
miRNA:   3'- -UUGACGCUGCa--CuUCGACGu---GUGC---GG- -5'
14276 5' -54.6 NC_003521.1 + 76072 0.66 0.977522
Target:  5'- uGACgGCGAUGUGcggcAGGUUGgACugGCg -3'
miRNA:   3'- -UUGaCGCUGCAC----UUCGACgUGugCGg -5'
14276 5' -54.6 NC_003521.1 + 58418 0.66 0.977522
Target:  5'- --aUGCGGCGguugacGAAGCcGCAgCGCuGCCg -3'
miRNA:   3'- uugACGCUGCa-----CUUCGaCGU-GUG-CGG- -5'
14276 5' -54.6 NC_003521.1 + 48817 0.66 0.977522
Target:  5'- -cCUGaCGACGaUGAacGGCUGCucgacgcugACGCGCg -3'
miRNA:   3'- uuGAC-GCUGC-ACU--UCGACG---------UGUGCGg -5'
14276 5' -54.6 NC_003521.1 + 123584 0.66 0.977522
Target:  5'- uGGCgGCGGCGccgGGAGCcGC-CGCgGCCg -3'
miRNA:   3'- -UUGaCGCUGCa--CUUCGaCGuGUG-CGG- -5'
14276 5' -54.6 NC_003521.1 + 63172 0.66 0.977522
Target:  5'- aGACUG-GACGUGugcaacgcaGAGCUGggcUACAUGCUg -3'
miRNA:   3'- -UUGACgCUGCAC---------UUCGAC---GUGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 113339 0.66 0.975079
Target:  5'- -cCUGCGACugGUGAcGCgcaucucgGCGCugGCg -3'
miRNA:   3'- uuGACGCUG--CACUuCGa-------CGUGugCGg -5'
14276 5' -54.6 NC_003521.1 + 235261 0.66 0.975079
Target:  5'- uGACaGCGACGgacgGAacaacgauggcGGCgGC-CGCGCCg -3'
miRNA:   3'- -UUGaCGCUGCa---CU-----------UCGaCGuGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 88008 0.66 0.975079
Target:  5'- ---cGCGACGccGAGCUGUACcaccUGCCg -3'
miRNA:   3'- uugaCGCUGCacUUCGACGUGu---GCGG- -5'
14276 5' -54.6 NC_003521.1 + 187772 0.66 0.975079
Target:  5'- -cCUGCG-CGaGGAGCUGgGCugGaCCc -3'
miRNA:   3'- uuGACGCuGCaCUUCGACgUGugC-GG- -5'
14276 5' -54.6 NC_003521.1 + 116612 0.66 0.975079
Target:  5'- cGCUGCGGCccgacaaggugGUGGAGUUccucagcgGCAgcUACGCCg -3'
miRNA:   3'- uUGACGCUG-----------CACUUCGA--------CGU--GUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 122694 0.66 0.975079
Target:  5'- cAGCUGCGGgGccGGucGGUUGUGCAgCGCCg -3'
miRNA:   3'- -UUGACGCUgCa-CU--UCGACGUGU-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.