miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14276 5' -54.6 NC_003521.1 + 14572 1.1 0.004429
Target:  5'- gAACUGCGACGUGAAGCUGCACACGCCg -3'
miRNA:   3'- -UUGACGCUGCACUUCGACGUGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 128480 0.94 0.051626
Target:  5'- gGGCaGCGGCGUGAGGCUGUGCGCGCCg -3'
miRNA:   3'- -UUGaCGCUGCACUUCGACGUGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 43140 0.83 0.247728
Target:  5'- cGCUG-GGCGUGGAGgUGCACGCGCUg -3'
miRNA:   3'- uUGACgCUGCACUUCgACGUGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 184868 0.82 0.285259
Target:  5'- ---gGCGugGUGggGCUGCACACGgUg -3'
miRNA:   3'- uugaCGCugCACuuCGACGUGUGCgG- -5'
14276 5' -54.6 NC_003521.1 + 19852 0.81 0.319852
Target:  5'- ---cGCGACGUGGAGCUGCA-GCGCUc -3'
miRNA:   3'- uugaCGCUGCACUUCGACGUgUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 63949 0.81 0.327137
Target:  5'- cGGCUGa-GCGUGGAGCUGCugGCGCg -3'
miRNA:   3'- -UUGACgcUGCACUUCGACGugUGCGg -5'
14276 5' -54.6 NC_003521.1 + 104219 0.78 0.432715
Target:  5'- uGCUGCagcccagcgagGACGUGGAGCUGCGCGaGCUg -3'
miRNA:   3'- uUGACG-----------CUGCACUUCGACGUGUgCGG- -5'
14276 5' -54.6 NC_003521.1 + 44356 0.76 0.565588
Target:  5'- ---cGCGACGcgcUGggGCUGCGgccCACGCCc -3'
miRNA:   3'- uugaCGCUGC---ACuuCGACGU---GUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 86888 0.75 0.596715
Target:  5'- uGACggcGCGGCGgguggccgaggagugGAAGCUGCACGCGgCg -3'
miRNA:   3'- -UUGa--CGCUGCa--------------CUUCGACGUGUGCgG- -5'
14276 5' -54.6 NC_003521.1 + 27247 0.75 0.605807
Target:  5'- cGGCUGCuACGUGgcGCUGCugucggucaGCACGCUc -3'
miRNA:   3'- -UUGACGcUGCACuuCGACG---------UGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 206212 0.75 0.615928
Target:  5'- cGCUGCGAcccCGUGcacGAGUccaucUGCGCGCGCCu -3'
miRNA:   3'- uUGACGCU---GCAC---UUCG-----ACGUGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 102994 0.75 0.619979
Target:  5'- cAGCcGCGGCGUGAgcgccuuaauaaugcAGCUGCGCucgucCGCCc -3'
miRNA:   3'- -UUGaCGCUGCACU---------------UCGACGUGu----GCGG- -5'
14276 5' -54.6 NC_003521.1 + 228736 0.75 0.62606
Target:  5'- gGGCUGCGugGUGAgcAGCgGCGUGCGCa -3'
miRNA:   3'- -UUGACGCugCACU--UCGaCGUGUGCGg -5'
14276 5' -54.6 NC_003521.1 + 115847 0.75 0.630114
Target:  5'- uGCUGCGccGCGUGGAgggcaaccagauccuGCUGCACGUGCCc -3'
miRNA:   3'- uUGACGC--UGCACUU---------------CGACGUGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 18854 0.75 0.630114
Target:  5'- cGAgUGCGGCGUGGAGCUGUcgugucagcugaGCagcgacgaggacgagGCGCCg -3'
miRNA:   3'- -UUgACGCUGCACUUCGACG------------UG---------------UGCGG- -5'
14276 5' -54.6 NC_003521.1 + 35804 0.74 0.64633
Target:  5'- cGACUacgGCGGCGUGGgcgagaaccuGGCgGUGCGCGCCg -3'
miRNA:   3'- -UUGA---CGCUGCACU----------UCGaCGUGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 141984 0.74 0.64633
Target:  5'- gAGCUGCaGCG-GGAGCUgGCcCGCGCCa -3'
miRNA:   3'- -UUGACGcUGCaCUUCGA-CGuGUGCGG- -5'
14276 5' -54.6 NC_003521.1 + 31086 0.74 0.666556
Target:  5'- cGGCUGcCGugGcUGccGCUGCGCACGaCCu -3'
miRNA:   3'- -UUGAC-GCugC-ACuuCGACGUGUGC-GG- -5'
14276 5' -54.6 NC_003521.1 + 208830 0.74 0.675626
Target:  5'- cAGCUGUGcACGUugaccgaGGAGCUGUACAUGCg -3'
miRNA:   3'- -UUGACGC-UGCA-------CUUCGACGUGUGCGg -5'
14276 5' -54.6 NC_003521.1 + 14693 0.73 0.68567
Target:  5'- cGCUG-GugGUGggGCauccgcgccaaccUGUGCACGCCg -3'
miRNA:   3'- uUGACgCugCACuuCG-------------ACGUGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.