miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14277 3' -55.3 NC_003521.1 + 66932 0.66 0.982715
Target:  5'- gCUACGGCAa-CGUGGuguUCaAGUACCUGGc -3'
miRNA:   3'- -GAUGCUGUggGCGCU---GG-UCAUGGACC- -5'
14277 3' -55.3 NC_003521.1 + 68358 0.66 0.982715
Target:  5'- -gACGGCGCaCCGCuGCCGGcccUGCCUc- -3'
miRNA:   3'- gaUGCUGUG-GGCGcUGGUC---AUGGAcc -5'
14277 3' -55.3 NC_003521.1 + 131513 0.66 0.982715
Target:  5'- gCUACGugACggGCGAgaAGUACCUGc -3'
miRNA:   3'- -GAUGCugUGggCGCUggUCAUGGACc -5'
14277 3' -55.3 NC_003521.1 + 173248 0.66 0.982715
Target:  5'- -gGCGACucugGCCCGCGGggcCCGccGCCUGa -3'
miRNA:   3'- gaUGCUG----UGGGCGCU---GGUcaUGGACc -5'
14277 3' -55.3 NC_003521.1 + 120925 0.66 0.982715
Target:  5'- uUGCGGCuGCCCGCGGCggCGGcuccgGCgaGGg -3'
miRNA:   3'- gAUGCUG-UGGGCGCUG--GUCa----UGgaCC- -5'
14277 3' -55.3 NC_003521.1 + 196989 0.66 0.982715
Target:  5'- --gUGACggGCCCGCGGCCGGcggcggcugACCcGGc -3'
miRNA:   3'- gauGCUG--UGGGCGCUGGUCa--------UGGaCC- -5'
14277 3' -55.3 NC_003521.1 + 49151 0.66 0.982715
Target:  5'- uUGCGAUugUCGCGGCUgcUGCUgGGg -3'
miRNA:   3'- gAUGCUGugGGCGCUGGucAUGGaCC- -5'
14277 3' -55.3 NC_003521.1 + 163057 0.66 0.982715
Target:  5'- gUGCGcCugCCGCGACUAcauCCUGc -3'
miRNA:   3'- gAUGCuGugGGCGCUGGUcauGGACc -5'
14277 3' -55.3 NC_003521.1 + 99615 0.66 0.982715
Target:  5'- cCUGCaGCGCCCgGCGGCgCAGcGCCa-- -3'
miRNA:   3'- -GAUGcUGUGGG-CGCUG-GUCaUGGacc -5'
14277 3' -55.3 NC_003521.1 + 192860 0.66 0.982715
Target:  5'- -aGCGACG-CCGCGACUuGUGCUUc- -3'
miRNA:   3'- gaUGCUGUgGGCGCUGGuCAUGGAcc -5'
14277 3' -55.3 NC_003521.1 + 24626 0.66 0.982145
Target:  5'- -gAgGAC-CCCGCG-CCGGUGcucagcgccuucguCCUGGc -3'
miRNA:   3'- gaUgCUGuGGGCGCuGGUCAU--------------GGACC- -5'
14277 3' -55.3 NC_003521.1 + 208285 0.66 0.981561
Target:  5'- -gACGACGagcgggucuaUCGCGAUCcgcucaccaccuacgAGUACCUGGa -3'
miRNA:   3'- gaUGCUGUg---------GGCGCUGG---------------UCAUGGACC- -5'
14277 3' -55.3 NC_003521.1 + 60612 0.66 0.98076
Target:  5'- -cGCGGCACCaccaacgccgaGCG-CgAGUACCUGu -3'
miRNA:   3'- gaUGCUGUGGg----------CGCuGgUCAUGGACc -5'
14277 3' -55.3 NC_003521.1 + 63062 0.66 0.98076
Target:  5'- uCUugGGCGCCacgggcaGCGuACC-GUACCgcUGGa -3'
miRNA:   3'- -GAugCUGUGGg------CGC-UGGuCAUGG--ACC- -5'
14277 3' -55.3 NC_003521.1 + 92730 0.66 0.98076
Target:  5'- -aGCGugGCgCCGgGACCAGagcacgguCCUGa -3'
miRNA:   3'- gaUGCugUG-GGCgCUGGUCau------GGACc -5'
14277 3' -55.3 NC_003521.1 + 45124 0.66 0.98076
Target:  5'- uUACGACACgCUGCGggcgcuGCUAcGUACCUacuGGg -3'
miRNA:   3'- gAUGCUGUG-GGCGC------UGGU-CAUGGA---CC- -5'
14277 3' -55.3 NC_003521.1 + 114118 0.66 0.978644
Target:  5'- -gACGGCGCCCaaGAUCauGGUcgaguacuGCCUGGc -3'
miRNA:   3'- gaUGCUGUGGGcgCUGG--UCA--------UGGACC- -5'
14277 3' -55.3 NC_003521.1 + 73292 0.66 0.978644
Target:  5'- cCUGCGGCAggaCGcCGAgCAG-ACCUGGc -3'
miRNA:   3'- -GAUGCUGUgg-GC-GCUgGUCaUGGACC- -5'
14277 3' -55.3 NC_003521.1 + 152675 0.66 0.978644
Target:  5'- gCUGCGucagcagcCGCuCCGCGGCuCGGUGCUcGGc -3'
miRNA:   3'- -GAUGCu-------GUG-GGCGCUG-GUCAUGGaCC- -5'
14277 3' -55.3 NC_003521.1 + 59509 0.66 0.978644
Target:  5'- -gACGGCGCCC-UGGCCcgcGGgcgGCCUGa -3'
miRNA:   3'- gaUGCUGUGGGcGCUGG---UCa--UGGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.