miRNA display CGI


Results 1 - 20 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14277 3' -55.3 NC_003521.1 + 148681 0.69 0.923822
Target:  5'- aCUAC-ACGCUCGUcggGGCCAGUGCCa-- -3'
miRNA:   3'- -GAUGcUGUGGGCG---CUGGUCAUGGacc -5'
14277 3' -55.3 NC_003521.1 + 114961 0.7 0.860565
Target:  5'- -gGCGGCugCUGCGGCguCAGUcGCCUGu -3'
miRNA:   3'- gaUGCUGugGGCGCUG--GUCA-UGGACc -5'
14277 3' -55.3 NC_003521.1 + 31093 0.7 0.881738
Target:  5'- -gACGACGgCgGCGGCCGGUACacgcGGc -3'
miRNA:   3'- gaUGCUGUgGgCGCUGGUCAUGga--CC- -5'
14277 3' -55.3 NC_003521.1 + 82755 0.7 0.881738
Target:  5'- -gACGAgauCACgCGCGACCGGcggGCCgUGGa -3'
miRNA:   3'- gaUGCU---GUGgGCGCUGGUCa--UGG-ACC- -5'
14277 3' -55.3 NC_003521.1 + 138837 0.69 0.897354
Target:  5'- -gGCGGCuacgGCCUGCGGCCAGaugggcugcaccuucUGCgUGGa -3'
miRNA:   3'- gaUGCUG----UGGGCGCUGGUC---------------AUGgACC- -5'
14277 3' -55.3 NC_003521.1 + 71281 0.69 0.907084
Target:  5'- -gGCGGgGgCCGCGGCaCGGgccCCUGGg -3'
miRNA:   3'- gaUGCUgUgGGCGCUG-GUCau-GGACC- -5'
14277 3' -55.3 NC_003521.1 + 144108 0.69 0.907084
Target:  5'- aUGCGGCugCUG-GACCGccgcgGCCUGGa -3'
miRNA:   3'- gAUGCUGugGGCgCUGGUca---UGGACC- -5'
14277 3' -55.3 NC_003521.1 + 150040 0.69 0.91059
Target:  5'- -cGCGACGCCaCGCuGcACCGGguggucaucgucgACCUGGu -3'
miRNA:   3'- gaUGCUGUGG-GCG-C-UGGUCa------------UGGACC- -5'
14277 3' -55.3 NC_003521.1 + 74870 0.69 0.918463
Target:  5'- -cACGACAucuUCCGCGAgCAccccgACCUGGa -3'
miRNA:   3'- gaUGCUGU---GGGCGCUgGUca---UGGACC- -5'
14277 3' -55.3 NC_003521.1 + 202011 0.71 0.853119
Target:  5'- -cACGGCG-CCGCGACCAGguCCgGGg -3'
miRNA:   3'- gaUGCUGUgGGCGCUGGUCauGGaCC- -5'
14277 3' -55.3 NC_003521.1 + 130520 0.71 0.845488
Target:  5'- cCUGCGGCuGCCCGagcaGACCGuGUGCCa-- -3'
miRNA:   3'- -GAUGCUG-UGGGCg---CUGGU-CAUGGacc -5'
14277 3' -55.3 NC_003521.1 + 72030 0.71 0.837677
Target:  5'- -cGCGugGCCUGC-ACCAGguCCUGGu -3'
miRNA:   3'- gaUGCugUGGGCGcUGGUCauGGACC- -5'
14277 3' -55.3 NC_003521.1 + 88078 0.76 0.596137
Target:  5'- -gGCGGCGCCCGUGACCAcggGCCa-- -3'
miRNA:   3'- gaUGCUGUGGGCGCUGGUca-UGGacc -5'
14277 3' -55.3 NC_003521.1 + 74593 0.73 0.713505
Target:  5'- -cGCGGCGuCCCGCGGCCGGcgcGCCUc- -3'
miRNA:   3'- gaUGCUGU-GGGCGCUGGUCa--UGGAcc -5'
14277 3' -55.3 NC_003521.1 + 79687 0.73 0.723056
Target:  5'- -cGCGAcCGCCCGCGGCCGcGUugauCCUGc -3'
miRNA:   3'- gaUGCU-GUGGGCGCUGGU-CAu---GGACc -5'
14277 3' -55.3 NC_003521.1 + 32879 0.72 0.778553
Target:  5'- --uUGGCGCCCGCGccGCCGGUGCUg-- -3'
miRNA:   3'- gauGCUGUGGGCGC--UGGUCAUGGacc -5'
14277 3' -55.3 NC_003521.1 + 100120 0.72 0.778553
Target:  5'- aUGCGAC-CCCGCGGCUGGcgguCCUGcGg -3'
miRNA:   3'- gAUGCUGuGGGCGCUGGUCau--GGAC-C- -5'
14277 3' -55.3 NC_003521.1 + 12588 0.72 0.804774
Target:  5'- -gGCGGCACCCaccaCGACCAgcGUACCUa- -3'
miRNA:   3'- gaUGCUGUGGGc---GCUGGU--CAUGGAcc -5'
14277 3' -55.3 NC_003521.1 + 190288 0.71 0.829694
Target:  5'- cCUGCGAUAcugccgcgaacCCCGCGGCCcauuGGUACCa-- -3'
miRNA:   3'- -GAUGCUGU-----------GGGCGCUGG----UCAUGGacc -5'
14277 3' -55.3 NC_003521.1 + 32315 0.71 0.837677
Target:  5'- gCUGCGGCGCaCGUaGACCAuggcGUGCUUGGa -3'
miRNA:   3'- -GAUGCUGUGgGCG-CUGGU----CAUGGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.