miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14277 5' -59 NC_003521.1 + 163710 0.65 0.899172
Target:  5'- cGgCCACGagGCCgaauccugcgucgGGAUGAGC-GGCGCc -3'
miRNA:   3'- -CgGGUGU--UGGa------------CCUGCUCGaCCGCGc -5'
14277 5' -59 NC_003521.1 + 65343 0.66 0.895466
Target:  5'- aGCCaguGCAugCaGGACGuGCUguccggggagacGGCGCGc -3'
miRNA:   3'- -CGGg--UGUugGaCCUGCuCGA------------CCGCGC- -5'
14277 5' -59 NC_003521.1 + 29707 0.66 0.895466
Target:  5'- cGUCCuCGgcGCCUGGcuGCuGAGCcucGGCGCGa -3'
miRNA:   3'- -CGGGuGU--UGGACC--UG-CUCGa--CCGCGC- -5'
14277 5' -59 NC_003521.1 + 187431 0.66 0.895466
Target:  5'- cGCCCGCAaggAgCUGca-GaAGCUGGUGCGc -3'
miRNA:   3'- -CGGGUGU---UgGACcugC-UCGACCGCGC- -5'
14277 5' -59 NC_003521.1 + 12249 0.66 0.895466
Target:  5'- cGCCgACAACCUcaaGGGCGu-CUGGC-CGu -3'
miRNA:   3'- -CGGgUGUUGGA---CCUGCucGACCGcGC- -5'
14277 5' -59 NC_003521.1 + 16977 0.66 0.895466
Target:  5'- aGCCgcagcaGCAGCCgcagGGAC-AGCaGGCGCc -3'
miRNA:   3'- -CGGg-----UGUUGGa---CCUGcUCGaCCGCGc -5'
14277 5' -59 NC_003521.1 + 188708 0.66 0.895466
Target:  5'- -aCCACGGCguauCUGGAUcaGAGCUGgaaauggaGCGCGg -3'
miRNA:   3'- cgGGUGUUG----GACCUG--CUCGAC--------CGCGC- -5'
14277 5' -59 NC_003521.1 + 129921 0.66 0.895466
Target:  5'- cGCCUGCugcgcgaacACCUGGcCGAGaC-GGCGCa -3'
miRNA:   3'- -CGGGUGu--------UGGACCuGCUC-GaCCGCGc -5'
14277 5' -59 NC_003521.1 + 104050 0.66 0.894841
Target:  5'- aGCCCGCugucgcgcagguaGGCCaGcagcuCGAGCgGGCGCGg -3'
miRNA:   3'- -CGGGUG-------------UUGGaCcu---GCUCGaCCGCGC- -5'
14277 5' -59 NC_003521.1 + 43099 0.66 0.893585
Target:  5'- cGCgCGCGACgagcugaccaagcgCUGcGGCGAGCgcucGGCGCu -3'
miRNA:   3'- -CGgGUGUUG--------------GAC-CUGCUCGa---CCGCGc -5'
14277 5' -59 NC_003521.1 + 234077 0.66 0.889124
Target:  5'- cGCCCugGGaCUcGGCGAGCgcUGGCuGCGu -3'
miRNA:   3'- -CGGGugUUgGAcCUGCUCG--ACCG-CGC- -5'
14277 5' -59 NC_003521.1 + 238210 0.66 0.889124
Target:  5'- gGCCaAgAGCCUGGGCGucGGCacGGCGuCGa -3'
miRNA:   3'- -CGGgUgUUGGACCUGC--UCGa-CCGC-GC- -5'
14277 5' -59 NC_003521.1 + 92034 0.66 0.889124
Target:  5'- cGUCCGCAGCC---GCG-GCUccucGGCGCGa -3'
miRNA:   3'- -CGGGUGUUGGaccUGCuCGA----CCGCGC- -5'
14277 5' -59 NC_003521.1 + 168822 0.66 0.889124
Target:  5'- aUCCugAAgCUGGgccccaGCGAGCUG-CGCGu -3'
miRNA:   3'- cGGGugUUgGACC------UGCUCGACcGCGC- -5'
14277 5' -59 NC_003521.1 + 24478 0.66 0.889124
Target:  5'- gGCCagCGCGugCUGGAUcuaCUGGCGCu -3'
miRNA:   3'- -CGG--GUGUugGACCUGcucGACCGCGc -5'
14277 5' -59 NC_003521.1 + 213351 0.66 0.889124
Target:  5'- cGCCaCAUgacgGACCUGG-CcAGcCUGGCGCu -3'
miRNA:   3'- -CGG-GUG----UUGGACCuGcUC-GACCGCGc -5'
14277 5' -59 NC_003521.1 + 26455 0.66 0.889124
Target:  5'- gGCCUGCAacggcgugGCCUGGgagcaccgccuGCGcGCucucUGGCGCGa -3'
miRNA:   3'- -CGGGUGU--------UGGACC-----------UGCuCG----ACCGCGC- -5'
14277 5' -59 NC_003521.1 + 87907 0.66 0.888479
Target:  5'- uGCgCACGcugaaccagACCUGGgagcaccgcgugcACGAGCUG-CGCGa -3'
miRNA:   3'- -CGgGUGU---------UGGACC-------------UGCUCGACcGCGC- -5'
14277 5' -59 NC_003521.1 + 27226 0.66 0.888479
Target:  5'- cCCCaACAGCCUGGucauCGccGGCugcuacgUGGCGCu -3'
miRNA:   3'- cGGG-UGUUGGACCu---GC--UCG-------ACCGCGc -5'
14277 5' -59 NC_003521.1 + 29058 0.66 0.887182
Target:  5'- cGCUCaACGACCUGGccuuccuggugggcAuCGAGCucauggUGGCGCa -3'
miRNA:   3'- -CGGG-UGUUGGACC--------------U-GCUCG------ACCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.