miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14277 5' -59 NC_003521.1 + 14374 1.09 0.002533
Target:  5'- gGCCCACAACCUGGACGAGCUGGCGCGc -3'
miRNA:   3'- -CGGGUGUUGGACCUGCUCGACCGCGC- -5'
14277 5' -59 NC_003521.1 + 60269 0.85 0.102478
Target:  5'- gGCCCACGACCUGGugGGGCUaGGCu-- -3'
miRNA:   3'- -CGGGUGUUGGACCugCUCGA-CCGcgc -5'
14277 5' -59 NC_003521.1 + 73169 0.84 0.113233
Target:  5'- gGCCUGCGACCUGGACgcgGAGCUGGC-CGg -3'
miRNA:   3'- -CGGGUGUUGGACCUG---CUCGACCGcGC- -5'
14277 5' -59 NC_003521.1 + 106254 0.82 0.155861
Target:  5'- aGCCUGCAccccuACCUGGACGAGCUG-CGCa -3'
miRNA:   3'- -CGGGUGU-----UGGACCUGCUCGACcGCGc -5'
14277 5' -59 NC_003521.1 + 137282 0.79 0.238637
Target:  5'- gGCCCcaGCGACCUGGagcuGCGGG-UGGCGCGg -3'
miRNA:   3'- -CGGG--UGUUGGACC----UGCUCgACCGCGC- -5'
14277 5' -59 NC_003521.1 + 112957 0.78 0.282179
Target:  5'- cGCCgCGCAuCCUGGugggcaaccugcccgACGGGCUGGCGCc -3'
miRNA:   3'- -CGG-GUGUuGGACC---------------UGCUCGACCGCGc -5'
14277 5' -59 NC_003521.1 + 15949 0.78 0.285973
Target:  5'- uGCgCCAagcACCUGGACGA-CUGGCGCGc -3'
miRNA:   3'- -CG-GGUgu-UGGACCUGCUcGACCGCGC- -5'
14277 5' -59 NC_003521.1 + 100869 0.77 0.326125
Target:  5'- cGCCUcaagaGCGcCCUGGACGAGCUGGCc-- -3'
miRNA:   3'- -CGGG-----UGUuGGACCUGCUCGACCGcgc -5'
14277 5' -59 NC_003521.1 + 2229 0.77 0.326125
Target:  5'- gGCCCugcuaGugCUGGACGAGCUgGGUGCc -3'
miRNA:   3'- -CGGGug---UugGACCUGCUCGA-CCGCGc -5'
14277 5' -59 NC_003521.1 + 202457 0.77 0.326125
Target:  5'- gGCCCugcuaGugCUGGACGAGCUgGGUGCc -3'
miRNA:   3'- -CGGGug---UugGACCUGCUCGA-CCGCGc -5'
14277 5' -59 NC_003521.1 + 52349 0.77 0.33321
Target:  5'- gGCCCACGGCCUGcuCGuAGCUcggaGGCGCGu -3'
miRNA:   3'- -CGGGUGUUGGACcuGC-UCGA----CCGCGC- -5'
14277 5' -59 NC_003521.1 + 138060 0.76 0.347717
Target:  5'- cGCCCGCGACCgccgcGGAC-AGCUgaGGCGCu -3'
miRNA:   3'- -CGGGUGUUGGa----CCUGcUCGA--CCGCGc -5'
14277 5' -59 NC_003521.1 + 144124 0.76 0.370312
Target:  5'- -gCCGCGGCCUGGACGAGgU-GCGCc -3'
miRNA:   3'- cgGGUGUUGGACCUGCUCgAcCGCGc -5'
14277 5' -59 NC_003521.1 + 143047 0.76 0.370312
Target:  5'- uUCCGCGACCUGGAUGguGGUggUGGCGCc -3'
miRNA:   3'- cGGGUGUUGGACCUGC--UCG--ACCGCGc -5'
14277 5' -59 NC_003521.1 + 65115 0.76 0.378064
Target:  5'- cGCCgACAG-CUGGACGAGUaccgacagaUGGCGCa -3'
miRNA:   3'- -CGGgUGUUgGACCUGCUCG---------ACCGCGc -5'
14277 5' -59 NC_003521.1 + 172305 0.75 0.41842
Target:  5'- uCCCACAcaGCCUuGACGccGCUGGCGCa -3'
miRNA:   3'- cGGGUGU--UGGAcCUGCu-CGACCGCGc -5'
14277 5' -59 NC_003521.1 + 91946 0.75 0.426801
Target:  5'- cGgCCACGGCCgaggccaggcUGG-CGuAGCUGGCGCGg -3'
miRNA:   3'- -CgGGUGUUGG----------ACCuGC-UCGACCGCGC- -5'
14277 5' -59 NC_003521.1 + 195760 0.74 0.443855
Target:  5'- cGCaggaCGCGcguuGCCUGGcACGAGC-GGCGCGg -3'
miRNA:   3'- -CGg---GUGU----UGGACC-UGCUCGaCCGCGC- -5'
14277 5' -59 NC_003521.1 + 28833 0.74 0.443855
Target:  5'- uGUCUGCGgcGCCUGGACGAcgaGCUgcggcGGCGCGg -3'
miRNA:   3'- -CGGGUGU--UGGACCUGCU---CGA-----CCGCGC- -5'
14277 5' -59 NC_003521.1 + 12725 0.74 0.443856
Target:  5'- cGCgCaACAGCCUGGACGAGgUuuccGGCGCc -3'
miRNA:   3'- -CGgG-UGUUGGACCUGCUCgA----CCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.