miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14279 3' -53.7 NC_003521.1 + 216481 0.66 0.991168
Target:  5'- cACCUUCAGGUCccgccgCCGAUUcaUCGGaucgucgcuGUGCc -3'
miRNA:   3'- -UGGGAGUCUAGa-----GGCUAG--AGCU---------CACG- -5'
14279 3' -53.7 NC_003521.1 + 190742 0.66 0.991168
Target:  5'- aACCCUCuggacgccgaAGGUCUCaCGGgacucgCUCGGGagGCc -3'
miRNA:   3'- -UGGGAG----------UCUAGAG-GCUa-----GAGCUCa-CG- -5'
14279 3' -53.7 NC_003521.1 + 153477 0.66 0.991168
Target:  5'- cUCCUCGGG-CUCCGG-CUCGGGccGUc -3'
miRNA:   3'- uGGGAGUCUaGAGGCUaGAGCUCa-CG- -5'
14279 3' -53.7 NC_003521.1 + 15501 0.66 0.989969
Target:  5'- cUCCUCcu-UCUCCGGcgCUCGGGUugGCg -3'
miRNA:   3'- uGGGAGucuAGAGGCUa-GAGCUCA--CG- -5'
14279 3' -53.7 NC_003521.1 + 35839 0.66 0.989969
Target:  5'- uCCCgcaucgGGAUCgaggUCGcUCUCGGGUGCu -3'
miRNA:   3'- uGGGag----UCUAGa---GGCuAGAGCUCACG- -5'
14279 3' -53.7 NC_003521.1 + 19532 0.66 0.988645
Target:  5'- gGCCCUCGGA-C-CCGAggaUCGGGgucuugGCc -3'
miRNA:   3'- -UGGGAGUCUaGaGGCUag-AGCUCa-----CG- -5'
14279 3' -53.7 NC_003521.1 + 178023 0.67 0.983853
Target:  5'- uACCg-CGGAUCUCCGccGUCUUuugggGGGUGUa -3'
miRNA:   3'- -UGGgaGUCUAGAGGC--UAGAG-----CUCACG- -5'
14279 3' -53.7 NC_003521.1 + 67972 0.67 0.981955
Target:  5'- -gCCUCAGA-CUCCGAgagCGAGUcCg -3'
miRNA:   3'- ugGGAGUCUaGAGGCUagaGCUCAcG- -5'
14279 3' -53.7 NC_003521.1 + 147338 0.67 0.979895
Target:  5'- cGCCCUCGGAcucuucguccUCgUCCGA-UUCGGGcaugGCg -3'
miRNA:   3'- -UGGGAGUCU----------AG-AGGCUaGAGCUCa---CG- -5'
14279 3' -53.7 NC_003521.1 + 5493 0.67 0.977664
Target:  5'- cCCCUUAGAUCUggCCG-UCUCggcagGAGUaGCa -3'
miRNA:   3'- uGGGAGUCUAGA--GGCuAGAG-----CUCA-CG- -5'
14279 3' -53.7 NC_003521.1 + 146941 0.67 0.975256
Target:  5'- uGCCCUCgaaaaAGAUCaagagCCGGUCggguagCGAGaGCa -3'
miRNA:   3'- -UGGGAG-----UCUAGa----GGCUAGa-----GCUCaCG- -5'
14279 3' -53.7 NC_003521.1 + 111781 0.67 0.975256
Target:  5'- cGCCCUCguGGA-CUuuGAguuUCUgCGGGUGCc -3'
miRNA:   3'- -UGGGAG--UCUaGAggCU---AGA-GCUCACG- -5'
14279 3' -53.7 NC_003521.1 + 94961 0.67 0.972395
Target:  5'- uCCCUUAGAUgaagaaaaCUCCGAUUauuugcuauuuuuUUGAGUGUu -3'
miRNA:   3'- uGGGAGUCUA--------GAGGCUAG-------------AGCUCACG- -5'
14279 3' -53.7 NC_003521.1 + 34273 0.68 0.956731
Target:  5'- uGCCCUCGGGUCcCuCGAUUUCGcccAGgGCc -3'
miRNA:   3'- -UGGGAGUCUAGaG-GCUAGAGC---UCaCG- -5'
14279 3' -53.7 NC_003521.1 + 213142 0.69 0.952912
Target:  5'- cUCCUCGuGAUCUCCGcgcgcucgCUCGuGUGUc -3'
miRNA:   3'- uGGGAGU-CUAGAGGCua------GAGCuCACG- -5'
14279 3' -53.7 NC_003521.1 + 92579 0.71 0.895973
Target:  5'- cACCCUCGGuuggcggCUCCGGg-UUGGGUGUg -3'
miRNA:   3'- -UGGGAGUCua-----GAGGCUagAGCUCACG- -5'
14279 3' -53.7 NC_003521.1 + 106188 0.71 0.889436
Target:  5'- gACCuCUCcGAgagCUCCGAgguggccaUCUCcGAGUGCg -3'
miRNA:   3'- -UGG-GAGuCUa--GAGGCU--------AGAG-CUCACG- -5'
14279 3' -53.7 NC_003521.1 + 12793 1.12 0.005126
Target:  5'- uACCCUCAGAUCUCCGAUCUCGAGUGCg -3'
miRNA:   3'- -UGGGAGUCUAGAGGCUAGAGCUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.