miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14279 5' -54.6 NC_003521.1 + 117879 0.66 0.979323
Target:  5'- -cGCAcGUGGCUCGA-GAUCACgGUGCu -3'
miRNA:   3'- acCGU-CGUCGAGUUgCUAGUG-CACGc -5'
14279 5' -54.6 NC_003521.1 + 77715 0.66 0.979323
Target:  5'- aGGCGGCGGUggUCGugGcgCugGcGCc -3'
miRNA:   3'- aCCGUCGUCG--AGUugCuaGugCaCGc -5'
14279 5' -54.6 NC_003521.1 + 34058 0.66 0.979323
Target:  5'- gGGCAGCuugAGCUCGG-GGUUgaccuCGUGCa -3'
miRNA:   3'- aCCGUCG---UCGAGUUgCUAGu----GCACGc -5'
14279 5' -54.6 NC_003521.1 + 165767 0.66 0.979323
Target:  5'- aGGCGGUGGg-CAG-GAUCugGUGCu -3'
miRNA:   3'- aCCGUCGUCgaGUUgCUAGugCACGc -5'
14279 5' -54.6 NC_003521.1 + 36597 0.66 0.979323
Target:  5'- cUGGCGGCggguGGC-CGACGAcUCGCacgacuugugGUGCGc -3'
miRNA:   3'- -ACCGUCG----UCGaGUUGCU-AGUG----------CACGC- -5'
14279 5' -54.6 NC_003521.1 + 164697 0.66 0.979323
Target:  5'- aGGcCGGCGGCUgacgaagaaGACGA-CGCgGUGCGg -3'
miRNA:   3'- aCC-GUCGUCGAg--------UUGCUaGUG-CACGC- -5'
14279 5' -54.6 NC_003521.1 + 6056 0.66 0.979323
Target:  5'- cGGUAGCGGgUCGACGAagGgaaUGCGa -3'
miRNA:   3'- aCCGUCGUCgAGUUGCUagUgc-ACGC- -5'
14279 5' -54.6 NC_003521.1 + 101125 0.66 0.979323
Target:  5'- gGGgGGCGGgUCGGCGggCACGcggaaagcGCGg -3'
miRNA:   3'- aCCgUCGUCgAGUUGCuaGUGCa-------CGC- -5'
14279 5' -54.6 NC_003521.1 + 119826 0.66 0.979102
Target:  5'- gGaGCAGCGGCUCcgacuccGACGAggACGagcugGCGg -3'
miRNA:   3'- aC-CGUCGUCGAG-------UUGCUagUGCa----CGC- -5'
14279 5' -54.6 NC_003521.1 + 75613 0.66 0.979102
Target:  5'- gGGCGGCgccacGGCUCAgucgccgACGAUgACGacgGCa -3'
miRNA:   3'- aCCGUCG-----UCGAGU-------UGCUAgUGCa--CGc -5'
14279 5' -54.6 NC_003521.1 + 123583 0.66 0.97797
Target:  5'- aUGGCGGCGGCgccgggagccgccgCGGCcGUCAgcggGUGCGa -3'
miRNA:   3'- -ACCGUCGUCGa-------------GUUGcUAGUg---CACGC- -5'
14279 5' -54.6 NC_003521.1 + 64051 0.66 0.97797
Target:  5'- cUGG-AGguGCUCAACGAccugacggugcugggUC-UGUGCGa -3'
miRNA:   3'- -ACCgUCguCGAGUUGCU---------------AGuGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 156884 0.66 0.977032
Target:  5'- cGGCGGCcGCUgccCGAUGG-CACGggggGCGa -3'
miRNA:   3'- aCCGUCGuCGA---GUUGCUaGUGCa---CGC- -5'
14279 5' -54.6 NC_003521.1 + 27091 0.66 0.977032
Target:  5'- aGGCAGUgcaGGCUCucGACGG-CGCGcaggccggUGCGg -3'
miRNA:   3'- aCCGUCG---UCGAG--UUGCUaGUGC--------ACGC- -5'
14279 5' -54.6 NC_003521.1 + 172087 0.66 0.977032
Target:  5'- -aGCGGCGGCgUGAUGAagUC-CGUGCGg -3'
miRNA:   3'- acCGUCGUCGaGUUGCU--AGuGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 110693 0.66 0.977032
Target:  5'- cGGCAGCGGCggcgccgcCGACGAcgCAgGgGCa -3'
miRNA:   3'- aCCGUCGUCGa-------GUUGCUa-GUgCaCGc -5'
14279 5' -54.6 NC_003521.1 + 225245 0.66 0.977032
Target:  5'- aUGGCAGUAGaggaaCUCAuCGuGUCGCGUGa- -3'
miRNA:   3'- -ACCGUCGUC-----GAGUuGC-UAGUGCACgc -5'
14279 5' -54.6 NC_003521.1 + 179543 0.66 0.977032
Target:  5'- aGGUgcgcGCGGCUCAGCGccaagcaguaacAgaggCGCGUGUGg -3'
miRNA:   3'- aCCGu---CGUCGAGUUGC------------Ua---GUGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 72541 0.66 0.977032
Target:  5'- aGGCGGCGGC--GACGGUguCGUcgucucGCGa -3'
miRNA:   3'- aCCGUCGUCGagUUGCUAguGCA------CGC- -5'
14279 5' -54.6 NC_003521.1 + 204152 0.66 0.976794
Target:  5'- cGGCcuCAGCUCGGcCGAgacccccacguacUCuACGUGCGc -3'
miRNA:   3'- aCCGucGUCGAGUU-GCU-------------AG-UGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.