miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14279 5' -54.6 NC_003521.1 + 12831 1.08 0.00662
Target:  5'- cUGGCAGCAGCUCAACGAUCACGUGCGc -3'
miRNA:   3'- -ACCGUCGUCGAGUUGCUAGUGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 13465 0.79 0.407071
Target:  5'- cGGCGGUAGCgccgUCGACGGUCugG-GCGa -3'
miRNA:   3'- aCCGUCGUCG----AGUUGCUAGugCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 108639 0.78 0.450965
Target:  5'- aGGCGGCuGCcgaUCAGCGcgCACGUGUGc -3'
miRNA:   3'- aCCGUCGuCG---AGUUGCuaGUGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 66368 0.78 0.478513
Target:  5'- gUGGcCGGCGGCgagCAGCGAcaccagCGCGUGCGu -3'
miRNA:   3'- -ACC-GUCGUCGa--GUUGCUa-----GUGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 129637 0.77 0.487879
Target:  5'- cGGCGGguGCUCAACG-UCccCGUGCa -3'
miRNA:   3'- aCCGUCguCGAGUUGCuAGu-GCACGc -5'
14279 5' -54.6 NC_003521.1 + 97276 0.77 0.506863
Target:  5'- aUGGCGGCugcuGCUCGucgccgGCGGcgCGCGUGCGg -3'
miRNA:   3'- -ACCGUCGu---CGAGU------UGCUa-GUGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 224013 0.77 0.516473
Target:  5'- cGGCAGCGGCgggccCGGCGGUCGgG-GCGg -3'
miRNA:   3'- aCCGUCGUCGa----GUUGCUAGUgCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 127562 0.76 0.555586
Target:  5'- cGGcCAGguGCUCGGCGAUCAgCGUcaccaGCGa -3'
miRNA:   3'- aCC-GUCguCGAGUUGCUAGU-GCA-----CGC- -5'
14279 5' -54.6 NC_003521.1 + 116680 0.76 0.565507
Target:  5'- cGGCAGCGGCggcggaggCAGCGG-CGCGgGCGg -3'
miRNA:   3'- aCCGUCGUCGa-------GUUGCUaGUGCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 102774 0.76 0.565507
Target:  5'- cGGCAGCGGCUgcGCGAUgACGcgccgGCGg -3'
miRNA:   3'- aCCGUCGUCGAguUGCUAgUGCa----CGC- -5'
14279 5' -54.6 NC_003521.1 + 196335 0.76 0.565507
Target:  5'- cGGCuGCAGCUCGAUuuccagCGCGUGCa -3'
miRNA:   3'- aCCGuCGUCGAGUUGcua---GUGCACGc -5'
14279 5' -54.6 NC_003521.1 + 181399 0.75 0.605579
Target:  5'- cGGCGGCGGCgCcGCuGUCGCGUGCc -3'
miRNA:   3'- aCCGUCGUCGaGuUGcUAGUGCACGc -5'
14279 5' -54.6 NC_003521.1 + 117061 0.75 0.625758
Target:  5'- aGGCGGCcgcggAGC-CGGCGGUCAcgcCGUGCGa -3'
miRNA:   3'- aCCGUCG-----UCGaGUUGCUAGU---GCACGC- -5'
14279 5' -54.6 NC_003521.1 + 104069 0.75 0.625758
Target:  5'- aGGcCAGCAGCUCgAGCGggCGCG-GCa -3'
miRNA:   3'- aCC-GUCGUCGAG-UUGCuaGUGCaCGc -5'
14279 5' -54.6 NC_003521.1 + 120938 0.75 0.635858
Target:  5'- cGGCGGCGGCUcCGGCGAggggCAgGggGCGg -3'
miRNA:   3'- aCCGUCGUCGA-GUUGCUa---GUgCa-CGC- -5'
14279 5' -54.6 NC_003521.1 + 17490 0.74 0.645955
Target:  5'- cGGUAGCGGCgcCGcCGGUCACG-GCGg -3'
miRNA:   3'- aCCGUCGUCGa-GUuGCUAGUGCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 207128 0.74 0.645955
Target:  5'- gGGCGGagucCAGCUgCAGCG-UUACGUGCGg -3'
miRNA:   3'- aCCGUC----GUCGA-GUUGCuAGUGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 111034 0.74 0.656042
Target:  5'- -cGCGGuCGGcCUCGGCGcgCACGUGCGc -3'
miRNA:   3'- acCGUC-GUC-GAGUUGCuaGUGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 186635 0.73 0.70603
Target:  5'- gUGGUGGCGGCaagUCGACG-UCGCGcgGCGg -3'
miRNA:   3'- -ACCGUCGUCG---AGUUGCuAGUGCa-CGC- -5'
14279 5' -54.6 NC_003521.1 + 223360 0.73 0.70603
Target:  5'- cGGCGGCGGCcuuggucagCAGCGAcaUCGCG-GCGc -3'
miRNA:   3'- aCCGUCGUCGa--------GUUGCU--AGUGCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.