miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14279 5' -54.6 NC_003521.1 + 5518 0.67 0.95557
Target:  5'- gGaGUAGCAGCagCGACGGUgACG-GCa -3'
miRNA:   3'- aC-CGUCGUCGa-GUUGCUAgUGCaCGc -5'
14279 5' -54.6 NC_003521.1 + 6056 0.66 0.979323
Target:  5'- cGGUAGCGGgUCGACGAagGgaaUGCGa -3'
miRNA:   3'- aCCGUCGUCgAGUUGCUagUgc-ACGC- -5'
14279 5' -54.6 NC_003521.1 + 6510 0.71 0.826124
Target:  5'- cGGCAGaGGCUCAcCGGUgACGaggGCGg -3'
miRNA:   3'- aCCGUCgUCGAGUuGCUAgUGCa--CGC- -5'
14279 5' -54.6 NC_003521.1 + 7737 0.67 0.962732
Target:  5'- gGGCGGC-GCgagCGGCGGagGCG-GCGg -3'
miRNA:   3'- aCCGUCGuCGa--GUUGCUagUGCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 12831 1.08 0.00662
Target:  5'- cUGGCAGCAGCUCAACGAUCACGUGCGc -3'
miRNA:   3'- -ACCGUCGUCGAGUUGCUAGUGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 13465 0.79 0.407071
Target:  5'- cGGCGGUAGCgccgUCGACGGUCugG-GCGa -3'
miRNA:   3'- aCCGUCGUCG----AGUUGCUAGugCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 15318 0.68 0.928703
Target:  5'- cGGCgccgAGCGGgugaUCAGCGcgCugGUGCa -3'
miRNA:   3'- aCCG----UCGUCg---AGUUGCuaGugCACGc -5'
14279 5' -54.6 NC_003521.1 + 15524 0.68 0.938577
Target:  5'- uUGGCGGCGGCaugUGGCGAaCGCGcUGgGa -3'
miRNA:   3'- -ACCGUCGUCGa--GUUGCUaGUGC-ACgC- -5'
14279 5' -54.6 NC_003521.1 + 17015 0.66 0.968751
Target:  5'- gUGGCGGCGGCgCAggcccgucgucugGCGGccCACG-GCGg -3'
miRNA:   3'- -ACCGUCGUCGaGU-------------UGCUa-GUGCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 17490 0.74 0.645955
Target:  5'- cGGUAGCGGCgcCGcCGGUCACG-GCGg -3'
miRNA:   3'- aCCGUCGUCGa-GUuGCUAGUGCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 17507 0.69 0.89352
Target:  5'- -uGCGGCAGCgCGACGAgCGC-UGCGa -3'
miRNA:   3'- acCGUCGUCGaGUUGCUaGUGcACGC- -5'
14279 5' -54.6 NC_003521.1 + 18731 0.71 0.821083
Target:  5'- cUGGCGGCGGCgaucguggCGGCGGUgGCGccgacgggucgcugcUGCGa -3'
miRNA:   3'- -ACCGUCGUCGa-------GUUGCUAgUGC---------------ACGC- -5'
14279 5' -54.6 NC_003521.1 + 27091 0.66 0.977032
Target:  5'- aGGCAGUgcaGGCUCucGACGG-CGCGcaggccggUGCGg -3'
miRNA:   3'- aCCGUCG---UCGAG--UUGCUaGUGC--------ACGC- -5'
14279 5' -54.6 NC_003521.1 + 27974 0.7 0.85808
Target:  5'- aGGCGGC-GCUC-ACGGcCACG-GCGg -3'
miRNA:   3'- aCCGUCGuCGAGuUGCUaGUGCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 31306 0.73 0.72566
Target:  5'- cGGCAGCGGC--GACGGUCACcGUGa- -3'
miRNA:   3'- aCCGUCGUCGagUUGCUAGUG-CACgc -5'
14279 5' -54.6 NC_003521.1 + 31704 0.68 0.943167
Target:  5'- gGGCGGCGGCagCAugug-CGCGUGCu -3'
miRNA:   3'- aCCGUCGUCGa-GUugcuaGUGCACGc -5'
14279 5' -54.6 NC_003521.1 + 34058 0.66 0.979323
Target:  5'- gGGCAGCuugAGCUCGG-GGUUgaccuCGUGCa -3'
miRNA:   3'- aCCGUCG---UCGAGUUgCUAGu----GCACGc -5'
14279 5' -54.6 NC_003521.1 + 34082 0.69 0.912147
Target:  5'- cGGCGGCAG-UCGGCGAUauCGcGCGa -3'
miRNA:   3'- aCCGUCGUCgAGUUGCUAguGCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 34480 0.69 0.905555
Target:  5'- aGGcCAGCAGCUCGcggaagcagagcaGCGAgcgCAgGUaGCGg -3'
miRNA:   3'- aCC-GUCGUCGAGU-------------UGCUa--GUgCA-CGC- -5'
14279 5' -54.6 NC_003521.1 + 35755 0.7 0.865587
Target:  5'- cGGUuGCGGCUgGACGcUCcacaGCGUGCGc -3'
miRNA:   3'- aCCGuCGUCGAgUUGCuAG----UGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.