miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14279 5' -54.6 NC_003521.1 + 74792 0.71 0.809087
Target:  5'- cGGCGGCAGCgguagCGGCGAgaCGCGgacggacgGCGc -3'
miRNA:   3'- aCCGUCGUCGa----GUUGCUa-GUGCa-------CGC- -5'
14279 5' -54.6 NC_003521.1 + 163892 0.73 0.72566
Target:  5'- aGGCAGguGC-CGACGGugcguuacUCGgGUGCGg -3'
miRNA:   3'- aCCGUCguCGaGUUGCU--------AGUgCACGC- -5'
14279 5' -54.6 NC_003521.1 + 103236 0.73 0.735361
Target:  5'- aGGCGGCGGCcCAagaauaACGGUucgCGCGUGCa -3'
miRNA:   3'- aCCGUCGUCGaGU------UGCUA---GUGCACGc -5'
14279 5' -54.6 NC_003521.1 + 222681 0.73 0.744975
Target:  5'- aUGaGCAGCGGCUCGACc-UCggugcggccggGCGUGCGg -3'
miRNA:   3'- -AC-CGUCGUCGAGUUGcuAG-----------UGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 127784 0.72 0.754493
Target:  5'- gGGCGGCGGCcgUAGCcg-CACGUGCu -3'
miRNA:   3'- aCCGUCGUCGa-GUUGcuaGUGCACGc -5'
14279 5' -54.6 NC_003521.1 + 163770 0.72 0.782381
Target:  5'- cGGCGGCGGCaaCAACGGUaGCG-GCGc -3'
miRNA:   3'- aCCGUCGUCGa-GUUGCUAgUGCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 59612 0.72 0.782381
Target:  5'- gUGGCGGCGGCcccggCGGCGAcCGCG-GCu -3'
miRNA:   3'- -ACCGUCGUCGa----GUUGCUaGUGCaCGc -5'
14279 5' -54.6 NC_003521.1 + 150627 0.72 0.791426
Target:  5'- cGGCGGCuGCUgcgcaGGCGGggGCGUGCGc -3'
miRNA:   3'- aCCGUCGuCGAg----UUGCUagUGCACGC- -5'
14279 5' -54.6 NC_003521.1 + 163216 0.71 0.809087
Target:  5'- cGGCAGUAGCUCcGGCGGcCugGgacucGCGg -3'
miRNA:   3'- aCCGUCGUCGAG-UUGCUaGugCa----CGC- -5'
14279 5' -54.6 NC_003521.1 + 112091 0.73 0.72566
Target:  5'- gGGCGGCuGGCgggaagacuucaUCAugGAUCGgGUGCGc -3'
miRNA:   3'- aCCGUCG-UCG------------AGUugCUAGUgCACGC- -5'
14279 5' -54.6 NC_003521.1 + 96797 0.73 0.71588
Target:  5'- cGGCGGC-GCUCGggcACGAUCGCGcGUa -3'
miRNA:   3'- aCCGUCGuCGAGU---UGCUAGUGCaCGc -5'
14279 5' -54.6 NC_003521.1 + 223360 0.73 0.70603
Target:  5'- cGGCGGCGGCcuuggucagCAGCGAcaUCGCG-GCGc -3'
miRNA:   3'- aCCGUCGUCGa--------GUUGCU--AGUGCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 129637 0.77 0.487879
Target:  5'- cGGCGGguGCUCAACG-UCccCGUGCa -3'
miRNA:   3'- aCCGUCguCGAGUUGCuAGu-GCACGc -5'
14279 5' -54.6 NC_003521.1 + 224013 0.77 0.516473
Target:  5'- cGGCAGCGGCgggccCGGCGGUCGgG-GCGg -3'
miRNA:   3'- aCCGUCGUCGa----GUUGCUAGUgCaCGC- -5'
14279 5' -54.6 NC_003521.1 + 127562 0.76 0.555586
Target:  5'- cGGcCAGguGCUCGGCGAUCAgCGUcaccaGCGa -3'
miRNA:   3'- aCC-GUCguCGAGUUGCUAGU-GCA-----CGC- -5'
14279 5' -54.6 NC_003521.1 + 102774 0.76 0.565507
Target:  5'- cGGCAGCGGCUgcGCGAUgACGcgccgGCGg -3'
miRNA:   3'- aCCGUCGUCGAguUGCUAgUGCa----CGC- -5'
14279 5' -54.6 NC_003521.1 + 196335 0.76 0.565507
Target:  5'- cGGCuGCAGCUCGAUuuccagCGCGUGCa -3'
miRNA:   3'- aCCGuCGUCGAGUUGcua---GUGCACGc -5'
14279 5' -54.6 NC_003521.1 + 117061 0.75 0.625758
Target:  5'- aGGCGGCcgcggAGC-CGGCGGUCAcgcCGUGCGa -3'
miRNA:   3'- aCCGUCG-----UCGaGUUGCUAGU---GCACGC- -5'
14279 5' -54.6 NC_003521.1 + 120938 0.75 0.635858
Target:  5'- cGGCGGCGGCUcCGGCGAggggCAgGggGCGg -3'
miRNA:   3'- aCCGUCGUCGA-GUUGCUa---GUgCa-CGC- -5'
14279 5' -54.6 NC_003521.1 + 17490 0.74 0.645955
Target:  5'- cGGUAGCGGCgcCGcCGGUCACG-GCGg -3'
miRNA:   3'- aCCGUCGUCGa-GUuGCUAGUGCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.