Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1428 | 3' | -51.9 | NC_001335.1 | + | 1482 | 1.13 | 0.001174 |
Target: 5'- cGAUGGAUGACGCCAUGCGGAAGAUCCu -3' miRNA: 3'- -CUACCUACUGCGGUACGCCUUCUAGG- -5' |
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1428 | 3' | -51.9 | NC_001335.1 | + | 9491 | 0.73 | 0.485099 |
Target: 5'- --gGGAaGAgGCCAUGCGGAucgccuaccGGAUCa -3' miRNA: 3'- cuaCCUaCUgCGGUACGCCU---------UCUAGg -5' |
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1428 | 3' | -51.9 | NC_001335.1 | + | 25383 | 0.69 | 0.68486 |
Target: 5'- gGAUGGGgaucgcUGAagacucaGCgCA-GCGGAGGAUCCa -3' miRNA: 3'- -CUACCU------ACUg------CG-GUaCGCCUUCUAGG- -5' |
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1428 | 3' | -51.9 | NC_001335.1 | + | 26149 | 0.75 | 0.395445 |
Target: 5'- aGGUGGGUcGACGCCAguagccagaGCGGAGGgAUCg -3' miRNA: 3'- -CUACCUA-CUGCGGUa--------CGCCUUC-UAGg -5' |
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1428 | 3' | -51.9 | NC_001335.1 | + | 29358 | 0.67 | 0.839867 |
Target: 5'- gGAUGccGGUGAuCGaCAUGCGcGAGGUCCg -3' miRNA: 3'- -CUAC--CUACU-GCgGUACGCcUUCUAGG- -5' |
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1428 | 3' | -51.9 | NC_001335.1 | + | 33224 | 0.68 | 0.739909 |
Target: 5'- -cUGGA--ACGCCAggagcugGUGGAGGGUCa -3' miRNA: 3'- cuACCUacUGCGGUa------CGCCUUCUAGg -5' |
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1428 | 3' | -51.9 | NC_001335.1 | + | 36545 | 0.7 | 0.639785 |
Target: 5'- --cGGAccccaccacgGugGCCGUGgGuGGAGAUCCa -3' miRNA: 3'- cuaCCUa---------CugCGGUACgC-CUUCUAGG- -5' |
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1428 | 3' | -51.9 | NC_001335.1 | + | 39036 | 0.69 | 0.718147 |
Target: 5'- ---cGGUGAUGCCGUagGUGGccAGGAUCCg -3' miRNA: 3'- cuacCUACUGCGGUA--CGCC--UUCUAGG- -5' |
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1428 | 3' | -51.9 | NC_001335.1 | + | 45557 | 0.69 | 0.729079 |
Target: 5'- --aGGAcGAgGCCAucaaggaucUGCGGAAGugguUCCg -3' miRNA: 3'- cuaCCUaCUgCGGU---------ACGCCUUCu---AGG- -5' |
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1428 | 3' | -51.9 | NC_001335.1 | + | 46802 | 0.66 | 0.857438 |
Target: 5'- -cUGGAUGGCGUCGggcagGuCGGuGGuGUCCa -3' miRNA: 3'- cuACCUACUGCGGUa----C-GCCuUC-UAGG- -5' |
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1428 | 3' | -51.9 | NC_001335.1 | + | 49461 | 0.67 | 0.830731 |
Target: 5'- uGAUGGcucggugGGCaGCCucGCGGAAGGUCa -3' miRNA: 3'- -CUACCua-----CUG-CGGuaCGCCUUCUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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