miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 121046 0.68 0.986545
Target:  5'- cGUCGccgCUGCGCCGGucCcAGGUGUGCu -3'
miRNA:   3'- cCAGUa--GAUGCGGCU--GuUCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 58947 0.68 0.984862
Target:  5'- cGUCAUCggcgagcuCGCCGAgGGGucGUGCGUg -3'
miRNA:   3'- cCAGUAGau------GCGGCUgUUC--UACGCGu -5'
14280 3' -51.8 NC_003521.1 + 205354 0.68 0.984862
Target:  5'- cGG-CAgCUGCGCCGuGCAcGAccUGCGCGg -3'
miRNA:   3'- -CCaGUaGAUGCGGC-UGUuCU--ACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 103869 0.68 0.984862
Target:  5'- uGGcgAUCaGCGCCGACAgggGGAUGgGCu -3'
miRNA:   3'- -CCagUAGaUGCGGCUGU---UCUACgCGu -5'
14280 3' -51.8 NC_003521.1 + 122662 0.68 0.983024
Target:  5'- cGUCGUCUGCGgCGGUggGGUG-GCGu -3'
miRNA:   3'- cCAGUAGAUGCgGCUGuuCUACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 131237 0.68 0.983024
Target:  5'- cGUCG-CgacggcgAUGCCGACGGGAgcgGCGCu -3'
miRNA:   3'- cCAGUaGa------UGCGGCUGUUCUa--CGCGu -5'
14280 3' -51.8 NC_003521.1 + 122738 0.68 0.983024
Target:  5'- --aCGUgaGCGCCGACAGGAgcCGCGg -3'
miRNA:   3'- ccaGUAgaUGCGGCUGUUCUacGCGU- -5'
14280 3' -51.8 NC_003521.1 + 151978 0.68 0.983024
Target:  5'- aGUUcUCUACGCaCGAgAGGAUGgUGCAc -3'
miRNA:   3'- cCAGuAGAUGCG-GCUgUUCUAC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 128431 0.68 0.983024
Target:  5'- cGGUCGgcgcaCUGCGCCagccaggugGACGAGAcGcCGCAg -3'
miRNA:   3'- -CCAGUa----GAUGCGG---------CUGUUCUaC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 177773 0.69 0.981021
Target:  5'- cGGUCGUCgccaGgGCCGACGGGGccuguccgcuggUGgGCGu -3'
miRNA:   3'- -CCAGUAGa---UgCGGCUGUUCU------------ACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 69848 0.69 0.981021
Target:  5'- aGGUCGaugacGCGCCGAUGAGGccgccGCGCAg -3'
miRNA:   3'- -CCAGUaga--UGCGGCUGUUCUa----CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 100219 0.69 0.981021
Target:  5'- aGGUCGU--AgGCCGGCGAGGUGgaGCu -3'
miRNA:   3'- -CCAGUAgaUgCGGCUGUUCUACg-CGu -5'
14280 3' -51.8 NC_003521.1 + 44156 0.69 0.9806
Target:  5'- cGUCGUCgagcagcagcugGCGCCGucgguacuccGCGAGA-GCGCAg -3'
miRNA:   3'- cCAGUAGa-----------UGCGGC----------UGUUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 208048 0.69 0.978847
Target:  5'- gGGUC-UCU-CGCCGugAGGAaGCGgGa -3'
miRNA:   3'- -CCAGuAGAuGCGGCugUUCUaCGCgU- -5'
14280 3' -51.8 NC_003521.1 + 117638 0.69 0.976494
Target:  5'- uGUCGUuccgccugcgaCUGCGCCG-CGAGAcggUGCGCc -3'
miRNA:   3'- cCAGUA-----------GAUGCGGCuGUUCU---ACGCGu -5'
14280 3' -51.8 NC_003521.1 + 127661 0.69 0.976494
Target:  5'- cGGccCAUCUugGCCGcgaGCAGGcgGCGgGu -3'
miRNA:   3'- -CCa-GUAGAugCGGC---UGUUCuaCGCgU- -5'
14280 3' -51.8 NC_003521.1 + 170817 0.69 0.975752
Target:  5'- uGGUaCcgCUGCGCucgcugggacugcaCGACGAGAcGCGCGu -3'
miRNA:   3'- -CCA-GuaGAUGCG--------------GCUGUUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 102326 0.69 0.973955
Target:  5'- cGUCGUCgugcgcguggGCGCCGACGccgGGGUG-GCGg -3'
miRNA:   3'- cCAGUAGa---------UGCGGCUGU---UCUACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 170110 0.69 0.971221
Target:  5'- cGGUaCAUCcggcgcagGCGCCGACGcagcuuGcgGCGCAg -3'
miRNA:   3'- -CCA-GUAGa-------UGCGGCUGUu-----CuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 125232 0.69 0.971221
Target:  5'- uGGUacuUUUACcugaucgguaCCGGCAAGAUGCGCAu -3'
miRNA:   3'- -CCAgu-AGAUGc---------GGCUGUUCUACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.