miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 5' -53.9 NC_003521.1 + 54534 0.66 0.979438
Target:  5'- cGCCGCuGgGGCCCGGCGGCuuuuUGAcgUUGc -3'
miRNA:   3'- -UGGUG-CgUCGGGCUGUUGu---ACUa-GAC- -5'
14280 5' -53.9 NC_003521.1 + 197447 0.66 0.979438
Target:  5'- gGCCAgGCGGCgCCaGCG-CAUGcUCUGg -3'
miRNA:   3'- -UGGUgCGUCG-GGcUGUuGUACuAGAC- -5'
14280 5' -53.9 NC_003521.1 + 182428 0.66 0.979438
Target:  5'- cAUCACGCGGCCgCGGCAgaucccccuguGCAcgggGGUCa- -3'
miRNA:   3'- -UGGUGCGUCGG-GCUGU-----------UGUa---CUAGac -5'
14280 5' -53.9 NC_003521.1 + 90572 0.66 0.979438
Target:  5'- gGCCGCGguGCaggCCGACGugACGUGcUCg- -3'
miRNA:   3'- -UGGUGCguCG---GGCUGU--UGUACuAGac -5'
14280 5' -53.9 NC_003521.1 + 184051 0.66 0.979438
Target:  5'- cGCgCACaGCAGCUgGACGGCGU--UCUGa -3'
miRNA:   3'- -UG-GUG-CGUCGGgCUGUUGUAcuAGAC- -5'
14280 5' -53.9 NC_003521.1 + 72272 0.66 0.977146
Target:  5'- uACC-CGCAGCCCGcCAGCGccgccgccGcgCUGg -3'
miRNA:   3'- -UGGuGCGUCGGGCuGUUGUa-------CuaGAC- -5'
14280 5' -53.9 NC_003521.1 + 128680 0.66 0.977146
Target:  5'- gGCC-CGagAGCagCGACAugAUGAUCUGc -3'
miRNA:   3'- -UGGuGCg-UCGg-GCUGUugUACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 86056 0.66 0.977146
Target:  5'- uCCACGCcguuGCCCGAgAAgUAgccGAUCUGa -3'
miRNA:   3'- uGGUGCGu---CGGGCUgUU-GUa--CUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 101049 0.66 0.977146
Target:  5'- uCCAUgGCGGCcgCCGACGGCcgGAUCc- -3'
miRNA:   3'- uGGUG-CGUCG--GGCUGUUGuaCUAGac -5'
14280 5' -53.9 NC_003521.1 + 25866 0.67 0.974672
Target:  5'- aACCACGCugugaucGCCCagGACGA--UGGUCUGc -3'
miRNA:   3'- -UGGUGCGu------CGGG--CUGUUguACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 187479 0.67 0.974672
Target:  5'- uCCGcCGCcGCgCCGGCGugGUGGUCa- -3'
miRNA:   3'- uGGU-GCGuCG-GGCUGUugUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 160061 0.67 0.974672
Target:  5'- cGCCACGg---UCGACAGCAUGAUCg- -3'
miRNA:   3'- -UGGUGCgucgGGCUGUUGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 47441 0.67 0.974672
Target:  5'- gGCaCAUGCAGCCgGGCGccGCAcuccUGGUCg- -3'
miRNA:   3'- -UG-GUGCGUCGGgCUGU--UGU----ACUAGac -5'
14280 5' -53.9 NC_003521.1 + 47628 0.67 0.972009
Target:  5'- uCCAgGCGGCCgUGACGGCGgc-UCUGg -3'
miRNA:   3'- uGGUgCGUCGG-GCUGUUGUacuAGAC- -5'
14280 5' -53.9 NC_003521.1 + 144120 0.67 0.972009
Target:  5'- gACCGCcGCGGCCUGgACGAgGUGcgcCUGg -3'
miRNA:   3'- -UGGUG-CGUCGGGC-UGUUgUACua-GAC- -5'
14280 5' -53.9 NC_003521.1 + 190089 0.67 0.972009
Target:  5'- cCCGCuGCuGCgCCGACGACAUGccUCUa -3'
miRNA:   3'- uGGUG-CGuCG-GGCUGUUGUACu-AGAc -5'
14280 5' -53.9 NC_003521.1 + 227508 0.67 0.972009
Target:  5'- uGCCACggcagGCAGCCCaGGCu-CAUguugGAUCUGg -3'
miRNA:   3'- -UGGUG-----CGUCGGG-CUGuuGUA----CUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 165145 0.67 0.972009
Target:  5'- gACCGCGguG-CCGGCGugAUGGUg-- -3'
miRNA:   3'- -UGGUGCguCgGGCUGUugUACUAgac -5'
14280 5' -53.9 NC_003521.1 + 236233 0.67 0.96915
Target:  5'- cCCGCGCGGCCCGuuAGCAa------ -3'
miRNA:   3'- uGGUGCGUCGGGCugUUGUacuagac -5'
14280 5' -53.9 NC_003521.1 + 87971 0.67 0.96915
Target:  5'- cGCCuCGCGGCgCGAgGACucgGUGaAUCUGg -3'
miRNA:   3'- -UGGuGCGUCGgGCUgUUG---UAC-UAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.