miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14281 3' -62.3 NC_003521.1 + 105413 0.66 0.796251
Target:  5'- cGCCGggugauugGUUCCC--GCCCGCCucggcacgguuuggcGCCCGc -3'
miRNA:   3'- -CGGCa-------CAGGGGcaUGGGCGG---------------UGGGCa -5'
14281 3' -62.3 NC_003521.1 + 13940 0.66 0.79292
Target:  5'- cGCCGUGgugcCCCCGcagcUGCCCucgcuggaGCCcugaugggccuGCCCGg -3'
miRNA:   3'- -CGGCACa---GGGGC----AUGGG--------CGG-----------UGGGCa -5'
14281 3' -62.3 NC_003521.1 + 72400 0.66 0.79292
Target:  5'- cGCCG---CCgCGgcCCUGCCGCCCGc -3'
miRNA:   3'- -CGGCacaGGgGCauGGGCGGUGGGCa -5'
14281 3' -62.3 NC_003521.1 + 42436 0.66 0.79292
Target:  5'- cGCCGgaGUCgCC--GCCCGCCACaacgCCGUc -3'
miRNA:   3'- -CGGCa-CAGgGGcaUGGGCGGUG----GGCA- -5'
14281 3' -62.3 NC_003521.1 + 111272 0.66 0.79292
Target:  5'- cGUCGgGcCCgCCGUGCCagCGCCGCCgCGa -3'
miRNA:   3'- -CGGCaCaGG-GGCAUGG--GCGGUGG-GCa -5'
14281 3' -62.3 NC_003521.1 + 59945 0.66 0.792085
Target:  5'- cGCUGgacuUCUCCGUcuaucgccacaacGCCCGCCugACCCGc -3'
miRNA:   3'- -CGGCac--AGGGGCA-------------UGGGCGG--UGGGCa -5'
14281 3' -62.3 NC_003521.1 + 85317 0.66 0.784509
Target:  5'- cGCCGUcgCUCCagccuugGCCCGCgGCCCGc -3'
miRNA:   3'- -CGGCAcaGGGGca-----UGGGCGgUGGGCa -5'
14281 3' -62.3 NC_003521.1 + 234759 0.66 0.784509
Target:  5'- gGCCGUcgcauUCCCuuCGUcgACCCGCUaccGCCCGa -3'
miRNA:   3'- -CGGCAc----AGGG--GCA--UGGGCGG---UGGGCa -5'
14281 3' -62.3 NC_003521.1 + 158039 0.66 0.783662
Target:  5'- cGUCGUccaccucGUCCCUGUgcuccacgGCCCGCCGgUCGc -3'
miRNA:   3'- -CGGCA-------CAGGGGCA--------UGGGCGGUgGGCa -5'
14281 3' -62.3 NC_003521.1 + 77593 0.66 0.775982
Target:  5'- cGCCGUGgccgaaCCCaCGUcACCgGgCgCGCCCGUg -3'
miRNA:   3'- -CGGCACa-----GGG-GCA-UGGgC-G-GUGGGCA- -5'
14281 3' -62.3 NC_003521.1 + 34246 0.66 0.775982
Target:  5'- aGCCGgggCCUguCGUGcCCCGUCGCCCu- -3'
miRNA:   3'- -CGGCacaGGG--GCAU-GGGCGGUGGGca -5'
14281 3' -62.3 NC_003521.1 + 140654 0.66 0.775982
Target:  5'- aGCCGUGUCUCCcUACgaCCGCU-UCCGa -3'
miRNA:   3'- -CGGCACAGGGGcAUG--GGCGGuGGGCa -5'
14281 3' -62.3 NC_003521.1 + 52132 0.66 0.775982
Target:  5'- cGCCacggGaCCCgCGUAUCCcCCGCCCGUc -3'
miRNA:   3'- -CGGca--CaGGG-GCAUGGGcGGUGGGCA- -5'
14281 3' -62.3 NC_003521.1 + 148689 0.66 0.775982
Target:  5'- aGCCGggaagCCCCccGCCCGaaccgCACCCGg -3'
miRNA:   3'- -CGGCaca--GGGGcaUGGGCg----GUGGGCa -5'
14281 3' -62.3 NC_003521.1 + 204498 0.66 0.770813
Target:  5'- aGUCGcaUGUCCCCacgccccgacugaggGUGCgCC-CCACCCGg -3'
miRNA:   3'- -CGGC--ACAGGGG---------------CAUG-GGcGGUGGGCa -5'
14281 3' -62.3 NC_003521.1 + 23329 0.66 0.767346
Target:  5'- uCUGUGUCCgCGUACCUGCaaACCaUGUg -3'
miRNA:   3'- cGGCACAGGgGCAUGGGCGg-UGG-GCA- -5'
14281 3' -62.3 NC_003521.1 + 148896 0.66 0.767346
Target:  5'- cGCCGgGUCCaCCGcauCgCCGCCGCCg-- -3'
miRNA:   3'- -CGGCaCAGG-GGCau-G-GGCGGUGGgca -5'
14281 3' -62.3 NC_003521.1 + 25019 0.66 0.767346
Target:  5'- uGCCGUccuuuUCCuCCGgcuCCuCGCUGCCCGUc -3'
miRNA:   3'- -CGGCAc----AGG-GGCau-GG-GCGGUGGGCA- -5'
14281 3' -62.3 NC_003521.1 + 202520 0.66 0.767346
Target:  5'- gGCCGUG-CCUCG-GCCUGCaacaaCugCCGUg -3'
miRNA:   3'- -CGGCACaGGGGCaUGGGCG-----GugGGCA- -5'
14281 3' -62.3 NC_003521.1 + 104185 0.66 0.758608
Target:  5'- cGCCGccgCCCCGcGCCCGUgGCCg-- -3'
miRNA:   3'- -CGGCacaGGGGCaUGGGCGgUGGgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.