miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14281 3' -62.3 NC_003521.1 + 85317 0.66 0.784509
Target:  5'- cGCCGUcgCUCCagccuugGCCCGCgGCCCGc -3'
miRNA:   3'- -CGGCAcaGGGGca-----UGGGCGgUGGGCa -5'
14281 3' -62.3 NC_003521.1 + 166019 0.66 0.749775
Target:  5'- cGCCGUccGUCCgCGU-CUCGCCGCuaCCGc -3'
miRNA:   3'- -CGGCA--CAGGgGCAuGGGCGGUG--GGCa -5'
14281 3' -62.3 NC_003521.1 + 77593 0.66 0.775982
Target:  5'- cGCCGUGgccgaaCCCaCGUcACCgGgCgCGCCCGUg -3'
miRNA:   3'- -CGGCACa-----GGG-GCA-UGGgC-G-GUGGGCA- -5'
14281 3' -62.3 NC_003521.1 + 104185 0.66 0.758608
Target:  5'- cGCCGccgCCCCGcGCCCGUgGCCg-- -3'
miRNA:   3'- -CGGCacaGGGGCaUGGGCGgUGGgca -5'
14281 3' -62.3 NC_003521.1 + 23329 0.66 0.767346
Target:  5'- uCUGUGUCCgCGUACCUGCaaACCaUGUg -3'
miRNA:   3'- cGGCACAGGgGCAUGGGCGg-UGG-GCA- -5'
14281 3' -62.3 NC_003521.1 + 204498 0.66 0.770813
Target:  5'- aGUCGcaUGUCCCCacgccccgacugaggGUGCgCC-CCACCCGg -3'
miRNA:   3'- -CGGC--ACAGGGG---------------CAUG-GGcGGUGGGCa -5'
14281 3' -62.3 NC_003521.1 + 223333 0.66 0.749775
Target:  5'- cGCCGUGa--CCGgcgGCgCCGCUACCgGUg -3'
miRNA:   3'- -CGGCACaggGGCa--UG-GGCGGUGGgCA- -5'
14281 3' -62.3 NC_003521.1 + 42436 0.66 0.79292
Target:  5'- cGCCGgaGUCgCC--GCCCGCCACaacgCCGUc -3'
miRNA:   3'- -CGGCa-CAGgGGcaUGGGCGGUG----GGCA- -5'
14281 3' -62.3 NC_003521.1 + 140654 0.66 0.775982
Target:  5'- aGCCGUGUCUCCcUACgaCCGCU-UCCGa -3'
miRNA:   3'- -CGGCACAGGGGcAUG--GGCGGuGGGCa -5'
14281 3' -62.3 NC_003521.1 + 105413 0.66 0.796251
Target:  5'- cGCCGggugauugGUUCCC--GCCCGCCucggcacgguuuggcGCCCGc -3'
miRNA:   3'- -CGGCa-------CAGGGGcaUGGGCGG---------------UGGGCa -5'
14281 3' -62.3 NC_003521.1 + 194059 0.66 0.749775
Target:  5'- aCCGUG-CCCCGUAUcagCUGCUACCa-- -3'
miRNA:   3'- cGGCACaGGGGCAUG---GGCGGUGGgca -5'
14281 3' -62.3 NC_003521.1 + 58041 0.66 0.758608
Target:  5'- cGCgCGUGUUgCUGcUGgCgGCCACCCGa -3'
miRNA:   3'- -CG-GCACAGgGGC-AUgGgCGGUGGGCa -5'
14281 3' -62.3 NC_003521.1 + 94449 0.66 0.749775
Target:  5'- cGCgGa-UCCCUGUACCCGgaaCCGcCCCGUg -3'
miRNA:   3'- -CGgCacAGGGGCAUGGGC---GGU-GGGCA- -5'
14281 3' -62.3 NC_003521.1 + 50281 0.66 0.749775
Target:  5'- aGCCGgGUCCgCCGcUGCugCCGCCGCaCCu- -3'
miRNA:   3'- -CGGCaCAGG-GGC-AUG--GGCGGUG-GGca -5'
14281 3' -62.3 NC_003521.1 + 69944 0.66 0.750662
Target:  5'- cGCCGgacgccugaccaCCCGcGCCCGCC-CCCGc -3'
miRNA:   3'- -CGGCacag--------GGGCaUGGGCGGuGGGCa -5'
14281 3' -62.3 NC_003521.1 + 44971 0.66 0.758608
Target:  5'- aCCGcGaUCCCCGaACCCuGCCGCgCGa -3'
miRNA:   3'- cGGCaC-AGGGGCaUGGG-CGGUGgGCa -5'
14281 3' -62.3 NC_003521.1 + 163566 0.66 0.757729
Target:  5'- cGCUguGUGUCCCCcuuccccccguguGUGCCCuGUCGuccCCCGUa -3'
miRNA:   3'- -CGG--CACAGGGG-------------CAUGGG-CGGU---GGGCA- -5'
14281 3' -62.3 NC_003521.1 + 43486 0.66 0.747108
Target:  5'- gGCCGUGcuggCCgcggcggccaacauCCGUcagcGCCUGCCGCCCc- -3'
miRNA:   3'- -CGGCACa---GG--------------GGCA----UGGGCGGUGGGca -5'
14281 3' -62.3 NC_003521.1 + 191212 0.66 0.749775
Target:  5'- cGCCGUGUCCuCCGcguCCCcagCGCCgGUg -3'
miRNA:   3'- -CGGCACAGG-GGCau-GGGcg-GUGGgCA- -5'
14281 3' -62.3 NC_003521.1 + 103557 0.66 0.749775
Target:  5'- cGCUGggGcCCCCGcucUGCCCGCUGCcgCCGUc -3'
miRNA:   3'- -CGGCa-CaGGGGC---AUGGGCGGUG--GGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.