miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14281 3' -62.3 NC_003521.1 + 11420 1.09 0.001563
Target:  5'- cGCCGUGUCCCCGUACCCGCCACCCGUg -3'
miRNA:   3'- -CGGCACAGGGGCAUGGGCGGUGGGCA- -5'
14281 3' -62.3 NC_003521.1 + 32892 0.8 0.145388
Target:  5'- cGCCgGUGcugCCgCCGUGCCCGCCGCCCc- -3'
miRNA:   3'- -CGG-CACa--GG-GGCAUGGGCGGUGGGca -5'
14281 3' -62.3 NC_003521.1 + 142576 0.78 0.210751
Target:  5'- cGCCGUGcCCgCCGUGgCCGCC-CCCGc -3'
miRNA:   3'- -CGGCACaGG-GGCAUgGGCGGuGGGCa -5'
14281 3' -62.3 NC_003521.1 + 71824 0.77 0.220507
Target:  5'- uGCCGg--CCCCGUcGCCCGCCuCCCGc -3'
miRNA:   3'- -CGGCacaGGGGCA-UGGGCGGuGGGCa -5'
14281 3' -62.3 NC_003521.1 + 212157 0.76 0.252101
Target:  5'- gGCCGUGUCCauGUGCCgCGCCuuGCCCa- -3'
miRNA:   3'- -CGGCACAGGggCAUGG-GCGG--UGGGca -5'
14281 3' -62.3 NC_003521.1 + 2055 0.76 0.263431
Target:  5'- uGCCGUGUCCCCaccucuGUcgaGCuCCGCCGgCCCGa -3'
miRNA:   3'- -CGGCACAGGGG------CA---UG-GGCGGU-GGGCa -5'
14281 3' -62.3 NC_003521.1 + 202283 0.76 0.263431
Target:  5'- uGCCGUGUCCCCaccucuGUcgaGCuCCGCCGgCCCGa -3'
miRNA:   3'- -CGGCACAGGGG------CA---UG-GGCGGU-GGGCa -5'
14281 3' -62.3 NC_003521.1 + 118063 0.76 0.268664
Target:  5'- gGCCGccaUCCCCGUGCCCggugucaGCCACUCGg -3'
miRNA:   3'- -CGGCac-AGGGGCAUGGG-------CGGUGGGCa -5'
14281 3' -62.3 NC_003521.1 + 139688 0.75 0.293563
Target:  5'- cGCCGcGcuuUCCgCGUGCCCGCCgACCCGc -3'
miRNA:   3'- -CGGCaC---AGGgGCAUGGGCGG-UGGGCa -5'
14281 3' -62.3 NC_003521.1 + 73903 0.75 0.299902
Target:  5'- gGCCGUGggCCCCGUcuACCUcuGCCccguGCCCGUg -3'
miRNA:   3'- -CGGCACa-GGGGCA--UGGG--CGG----UGGGCA- -5'
14281 3' -62.3 NC_003521.1 + 154 0.74 0.354418
Target:  5'- cGCCaaaccaGUCCCCGcgacgACCCGCCGgCCCGa -3'
miRNA:   3'- -CGGca----CAGGGGCa----UGGGCGGU-GGGCa -5'
14281 3' -62.3 NC_003521.1 + 240703 0.74 0.354418
Target:  5'- cGCCaaaccaGUCCCCGcgacgACCCGCCGgCCCGa -3'
miRNA:   3'- -CGGca----CAGGGGCa----UGGGCGGU-GGGCa -5'
14281 3' -62.3 NC_003521.1 + 40476 0.74 0.354418
Target:  5'- cGCCaaaccaGUCCCCGcgacgACCCGCCGgCCCGa -3'
miRNA:   3'- -CGGca----CAGGGGCa----UGGGCGGU-GGGCa -5'
14281 3' -62.3 NC_003521.1 + 150831 0.74 0.354418
Target:  5'- -aCGUGUCCCCGcag-CGCCACCCGc -3'
miRNA:   3'- cgGCACAGGGGCauggGCGGUGGGCa -5'
14281 3' -62.3 NC_003521.1 + 151091 0.73 0.361704
Target:  5'- uGCCGUcaccGcCCCCGUGCCCacgucuuCCACCCGc -3'
miRNA:   3'- -CGGCA----CaGGGGCAUGGGc------GGUGGGCa -5'
14281 3' -62.3 NC_003521.1 + 74913 0.73 0.364648
Target:  5'- gGCgGUGgagucggCCCggcagcgcgggguggUGUACCCGCCGCCCGa -3'
miRNA:   3'- -CGgCACa------GGG---------------GCAUGGGCGGUGGGCa -5'
14281 3' -62.3 NC_003521.1 + 201606 0.73 0.376588
Target:  5'- aCCGcUGUCCCCGaGCCCGCgCugCUGc -3'
miRNA:   3'- cGGC-ACAGGGGCaUGGGCG-GugGGCa -5'
14281 3' -62.3 NC_003521.1 + 1379 0.73 0.376588
Target:  5'- aCCGcUGUCCCCGaGCCCGCgCugCUGc -3'
miRNA:   3'- cGGC-ACAGGGGCaUGGGCG-GugGGCa -5'
14281 3' -62.3 NC_003521.1 + 114508 0.73 0.384183
Target:  5'- cGUCGUGgCCgCCGUGCCCaccGCCGCCaCGg -3'
miRNA:   3'- -CGGCACaGG-GGCAUGGG---CGGUGG-GCa -5'
14281 3' -62.3 NC_003521.1 + 107062 0.73 0.384184
Target:  5'- cGCCGcGUCCCCGgaaucgccggGCCUGCCGgCCa- -3'
miRNA:   3'- -CGGCaCAGGGGCa---------UGGGCGGUgGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.