miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14281 5' -50.3 NC_003521.1 + 114951 0.66 0.999777
Target:  5'- cUCGCGcAGCGGCGgcUGCu-GCGGCGUc -3'
miRNA:   3'- -GGUGC-UUGCUGCacAUGuuCGCUGCA- -5'
14281 5' -50.3 NC_003521.1 + 143194 0.66 0.999777
Target:  5'- gCCGCGAACGuCGagccUGaGCAcGaCGACGUg -3'
miRNA:   3'- -GGUGCUUGCuGC----ACaUGUuC-GCUGCA- -5'
14281 5' -50.3 NC_003521.1 + 164498 0.66 0.999777
Target:  5'- cCUGCGAguucgucaAgGGCGUG-ACGcGCGACGUg -3'
miRNA:   3'- -GGUGCU--------UgCUGCACaUGUuCGCUGCA- -5'
14281 5' -50.3 NC_003521.1 + 198191 0.66 0.999777
Target:  5'- aCCGCGGcuGCuGACGUGUucccAGCGGCc- -3'
miRNA:   3'- -GGUGCU--UG-CUGCACAugu-UCGCUGca -5'
14281 5' -50.3 NC_003521.1 + 148444 0.66 0.999777
Target:  5'- cCgGCgGAGCGACGgcagcggGCGAGCgGACGg -3'
miRNA:   3'- -GgUG-CUUGCUGCaca----UGUUCG-CUGCa -5'
14281 5' -50.3 NC_003521.1 + 178257 0.66 0.999777
Target:  5'- -gGCG-GCGGCGuUGcUGCAuuGCGACGUg -3'
miRNA:   3'- ggUGCuUGCUGC-AC-AUGUu-CGCUGCA- -5'
14281 5' -50.3 NC_003521.1 + 54097 0.66 0.999777
Target:  5'- aCAuCGAGcCGGCGUcgAUAGGUGACGg -3'
miRNA:   3'- gGU-GCUU-GCUGCAcaUGUUCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 192366 0.66 0.999777
Target:  5'- gCACGGGCGGCGUuggGgGAcGCGACu- -3'
miRNA:   3'- gGUGCUUGCUGCAca-UgUU-CGCUGca -5'
14281 5' -50.3 NC_003521.1 + 172334 0.66 0.999777
Target:  5'- gCgGCGGACGG-GUG-AgGGGCGGCGg -3'
miRNA:   3'- -GgUGCUUGCUgCACaUgUUCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 7549 0.66 0.999771
Target:  5'- gCCuCGGAUGACGUauauaagagcagcGUggguacggugACGAGUGACGUa -3'
miRNA:   3'- -GGuGCUUGCUGCA-------------CA----------UGUUCGCUGCA- -5'
14281 5' -50.3 NC_003521.1 + 184026 0.66 0.999744
Target:  5'- uUCGCGcGCGACGccgguugggcggccaUGUGCAAGUgGAUGa -3'
miRNA:   3'- -GGUGCuUGCUGC---------------ACAUGUUCG-CUGCa -5'
14281 5' -50.3 NC_003521.1 + 224466 0.66 0.999719
Target:  5'- -gACG-AUGAcCGUGUAgAAGCGGCa- -3'
miRNA:   3'- ggUGCuUGCU-GCACAUgUUCGCUGca -5'
14281 5' -50.3 NC_003521.1 + 133892 0.66 0.999719
Target:  5'- gCCGCGAA-GACcuugaaagauauGUGaUACAuauGCGACGUg -3'
miRNA:   3'- -GGUGCUUgCUG------------CAC-AUGUu--CGCUGCA- -5'
14281 5' -50.3 NC_003521.1 + 206706 0.66 0.999719
Target:  5'- cCC-CGucGCGAUacGUGCGGGCGGCGg -3'
miRNA:   3'- -GGuGCu-UGCUGcaCAUGUUCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 80294 0.66 0.999719
Target:  5'- gCGCGucCGACGUGcu--GGUGACGg -3'
miRNA:   3'- gGUGCuuGCUGCACauguUCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 212887 0.66 0.999719
Target:  5'- aCGCGGGCGACGgggGUGucgguggacuCGAG-GACGg -3'
miRNA:   3'- gGUGCUUGCUGCa--CAU----------GUUCgCUGCa -5'
14281 5' -50.3 NC_003521.1 + 142917 0.66 0.999719
Target:  5'- cCgGCGAcguCGGCGU-UGCAgcAGCGGCGg -3'
miRNA:   3'- -GgUGCUu--GCUGCAcAUGU--UCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 92006 0.66 0.999719
Target:  5'- gCGgGAGCGGCGagGcGCGgcGGCGGCGg -3'
miRNA:   3'- gGUgCUUGCUGCa-CaUGU--UCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 218715 0.66 0.999719
Target:  5'- aCgGCGGcgGCGGCGggcgAgAAGCGGCGUc -3'
miRNA:   3'- -GgUGCU--UGCUGCaca-UgUUCGCUGCA- -5'
14281 5' -50.3 NC_003521.1 + 195316 0.66 0.999719
Target:  5'- uCCAUGcggcucgacGGCGACGUGUAgAAGgcugcCGugGUg -3'
miRNA:   3'- -GGUGC---------UUGCUGCACAUgUUC-----GCugCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.