miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14281 5' -50.3 NC_003521.1 + 10502 0.7 0.985291
Target:  5'- gCGgGGAUGGCGUGgcccccCAGGCGGCGc -3'
miRNA:   3'- gGUgCUUGCUGCACau----GUUCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 34731 0.72 0.972009
Target:  5'- uCCACGAACacCGgGUaccgACAGGCGGCGUa -3'
miRNA:   3'- -GGUGCUUGcuGCaCA----UGUUCGCUGCA- -5'
14281 5' -50.3 NC_003521.1 + 34523 0.71 0.974673
Target:  5'- gCCGCGGGCcgaGACGc--GCGAGCGGCGa -3'
miRNA:   3'- -GGUGCUUG---CUGCacaUGUUCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 42063 0.71 0.974673
Target:  5'- cCCACGAGCGGCGcGaccaGCGAGC-ACGg -3'
miRNA:   3'- -GGUGCUUGCUGCaCa---UGUUCGcUGCa -5'
14281 5' -50.3 NC_003521.1 + 165420 0.71 0.974673
Target:  5'- cCCACGAACGACuugcugGUGUucuUggGCGAgGg -3'
miRNA:   3'- -GGUGCUUGCUG------CACAu--GuuCGCUgCa -5'
14281 5' -50.3 NC_003521.1 + 31091 0.71 0.979438
Target:  5'- gCgACGAcgGCGGCGgccgGUACAcGCGGCGc -3'
miRNA:   3'- -GgUGCU--UGCUGCa---CAUGUuCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 25551 0.71 0.979438
Target:  5'- aCgGCGGACGcUGuUGUGCAGGCGGCc- -3'
miRNA:   3'- -GgUGCUUGCuGC-ACAUGUUCGCUGca -5'
14281 5' -50.3 NC_003521.1 + 237055 0.71 0.981554
Target:  5'- gCCGCGAcgACGcAUGUGUccgaGCAuGCGGCGg -3'
miRNA:   3'- -GGUGCU--UGC-UGCACA----UGUuCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 36766 0.71 0.983502
Target:  5'- uCCAaGGACGcGCGUGgccugGCGGGCGugGa -3'
miRNA:   3'- -GGUgCUUGC-UGCACa----UGUUCGCugCa -5'
14281 5' -50.3 NC_003521.1 + 116453 0.72 0.96915
Target:  5'- aCCACGAcgacGCGGcCGUGgugggACAcguGGCGGCGa -3'
miRNA:   3'- -GGUGCU----UGCU-GCACa----UGU---UCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 93969 0.72 0.96915
Target:  5'- uCCGCGAguaACGACGUGUuuACGAGCuaaguCGg -3'
miRNA:   3'- -GGUGCU---UGCUGCACA--UGUUCGcu---GCa -5'
14281 5' -50.3 NC_003521.1 + 74123 0.72 0.96915
Target:  5'- cCCAUGGGCGcCGU--GCAGGaCGACGUg -3'
miRNA:   3'- -GGUGCUUGCuGCAcaUGUUC-GCUGCA- -5'
14281 5' -50.3 NC_003521.1 + 109185 0.75 0.87968
Target:  5'- gCCACGAugggucGCGugGUGUGCAuguuGCG-CGUc -3'
miRNA:   3'- -GGUGCU------UGCugCACAUGUu---CGCuGCA- -5'
14281 5' -50.3 NC_003521.1 + 100507 0.75 0.893293
Target:  5'- aCCGCGGGCGuCGgacgGUGCAcGGUGGCGg -3'
miRNA:   3'- -GGUGCUUGCuGCa---CAUGU-UCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 207445 0.74 0.912021
Target:  5'- gCgGCGGcugGCGGCGUGUGUGAGUGACGg -3'
miRNA:   3'- -GgUGCU---UGCUGCACAUGUUCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 143054 0.74 0.917801
Target:  5'- aCCugGAugGugGUGgugGCGccGGUGGCGa -3'
miRNA:   3'- -GGugCUugCugCACa--UGU--UCGCUGCa -5'
14281 5' -50.3 NC_003521.1 + 19895 0.74 0.928659
Target:  5'- aUCACGAcaACGGCGUGcGgGAGCGGCu- -3'
miRNA:   3'- -GGUGCU--UGCUGCACaUgUUCGCUGca -5'
14281 5' -50.3 NC_003521.1 + 229400 0.73 0.938578
Target:  5'- aCACGggUGGCGgGUACGGGgacaCGGCGUa -3'
miRNA:   3'- gGUGCuuGCUGCaCAUGUUC----GCUGCA- -5'
14281 5' -50.3 NC_003521.1 + 87594 0.72 0.96282
Target:  5'- aCGCGGACGAaggcCGUGUuguaGCAGGUGugGc -3'
miRNA:   3'- gGUGCUUGCU----GCACA----UGUUCGCugCa -5'
14281 5' -50.3 NC_003521.1 + 200297 0.72 0.966089
Target:  5'- uCCGCG-GCGGCGUGcgGCGGGCcggccggucgGACGUg -3'
miRNA:   3'- -GGUGCuUGCUGCACa-UGUUCG----------CUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.