miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14282 3' -56.6 NC_003521.1 + 110012 0.66 0.947954
Target:  5'- cGGgaGA-UGUGCacCCGGcucUCGUGGGCGc -3'
miRNA:   3'- -CCaaCUaACACG--GGCCu--GGCACCCGC- -5'
14282 3' -56.6 NC_003521.1 + 18315 0.66 0.947954
Target:  5'- ------cUGUGCuuGgGACUGUGGGCc -3'
miRNA:   3'- ccaacuaACACGggC-CUGGCACCCGc -5'
14282 3' -56.6 NC_003521.1 + 35957 0.67 0.92984
Target:  5'- uGGUUGAccugcGUGCCCGaGAUCc-GGGUGg -3'
miRNA:   3'- -CCAACUaa---CACGGGC-CUGGcaCCCGC- -5'
14282 3' -56.6 NC_003521.1 + 98971 0.67 0.92984
Target:  5'- uGG-UGAggcgGUGCCgGGAgCCGUaGGCGc -3'
miRNA:   3'- -CCaACUaa--CACGGgCCU-GGCAcCCGC- -5'
14282 3' -56.6 NC_003521.1 + 153082 0.67 0.924766
Target:  5'- ---cGGg---GCCCGGGCCG-GGGCc -3'
miRNA:   3'- ccaaCUaacaCGGGCCUGGCaCCCGc -5'
14282 3' -56.6 NC_003521.1 + 184165 0.67 0.919473
Target:  5'- uGGUgcgcGAgcgggagGUGCaCCGGcCCGUGGuGCGc -3'
miRNA:   3'- -CCAa---CUaa-----CACG-GGCCuGGCACC-CGC- -5'
14282 3' -56.6 NC_003521.1 + 160309 0.68 0.911696
Target:  5'- cGGUgggcacgGCCauCGGAgCCGUGGGCGg -3'
miRNA:   3'- -CCAacuaacaCGG--GCCU-GGCACCCGC- -5'
14282 3' -56.6 NC_003521.1 + 139125 0.68 0.902288
Target:  5'- gGGUUGGUUGcagGCCaagcaGGACgUGUGGGa- -3'
miRNA:   3'- -CCAACUAACa--CGGg----CCUG-GCACCCgc -5'
14282 3' -56.6 NC_003521.1 + 121907 0.68 0.89613
Target:  5'- gGGgcaGAUg--GCCCGGcCCGUGGGg- -3'
miRNA:   3'- -CCaa-CUAacaCGGGCCuGGCACCCgc -5'
14282 3' -56.6 NC_003521.1 + 179453 0.68 0.883184
Target:  5'- aGGUccuUGAgcUGuUGCaggaagCGGGCCGUGGGCa -3'
miRNA:   3'- -CCA---ACUa-AC-ACGg-----GCCUGGCACCCGc -5'
14282 3' -56.6 NC_003521.1 + 196948 0.69 0.869423
Target:  5'- cGGUaGcgUGggcgacgGCCCGGgaGCCGgccgGGGCGc -3'
miRNA:   3'- -CCAaCuaACa------CGGGCC--UGGCa---CCCGC- -5'
14282 3' -56.6 NC_003521.1 + 126300 0.69 0.84733
Target:  5'- ---cGAUgGUGCCCGuggcGGCgGUGGGCa -3'
miRNA:   3'- ccaaCUAaCACGGGC----CUGgCACCCGc -5'
14282 3' -56.6 NC_003521.1 + 120716 0.7 0.8154
Target:  5'- ---aGGUUGUGgCCCuGGACCGUggccaccagGGGCa -3'
miRNA:   3'- ccaaCUAACAC-GGG-CCUGGCA---------CCCGc -5'
14282 3' -56.6 NC_003521.1 + 111210 0.7 0.807019
Target:  5'- uGGgcGAUg--GCgCCGGAaaGUGGGCGa -3'
miRNA:   3'- -CCaaCUAacaCG-GGCCUggCACCCGC- -5'
14282 3' -56.6 NC_003521.1 + 31498 0.7 0.798493
Target:  5'- gGGUUGGcacagGCCCaGcCCGUGGGCa -3'
miRNA:   3'- -CCAACUaaca-CGGGcCuGGCACCCGc -5'
14282 3' -56.6 NC_003521.1 + 232261 0.75 0.532332
Target:  5'- -uUUGGaUGUGCUCGGACCGUGacGGUGg -3'
miRNA:   3'- ccAACUaACACGGGCCUGGCAC--CCGC- -5'
14282 3' -56.6 NC_003521.1 + 8524 1.1 0.003891
Target:  5'- cGGUUGAUUGUGCCCGGACCGUGGGCGc -3'
miRNA:   3'- -CCAACUAACACGGGCCUGGCACCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.