Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14282 | 3' | -56.6 | NC_003521.1 | + | 110012 | 0.66 | 0.947954 |
Target: 5'- cGGgaGA-UGUGCacCCGGcucUCGUGGGCGc -3' miRNA: 3'- -CCaaCUaACACG--GGCCu--GGCACCCGC- -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 18315 | 0.66 | 0.947954 |
Target: 5'- ------cUGUGCuuGgGACUGUGGGCc -3' miRNA: 3'- ccaacuaACACGggC-CUGGCACCCGc -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 35957 | 0.67 | 0.92984 |
Target: 5'- uGGUUGAccugcGUGCCCGaGAUCc-GGGUGg -3' miRNA: 3'- -CCAACUaa---CACGGGC-CUGGcaCCCGC- -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 98971 | 0.67 | 0.92984 |
Target: 5'- uGG-UGAggcgGUGCCgGGAgCCGUaGGCGc -3' miRNA: 3'- -CCaACUaa--CACGGgCCU-GGCAcCCGC- -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 153082 | 0.67 | 0.924766 |
Target: 5'- ---cGGg---GCCCGGGCCG-GGGCc -3' miRNA: 3'- ccaaCUaacaCGGGCCUGGCaCCCGc -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 184165 | 0.67 | 0.919473 |
Target: 5'- uGGUgcgcGAgcgggagGUGCaCCGGcCCGUGGuGCGc -3' miRNA: 3'- -CCAa---CUaa-----CACG-GGCCuGGCACC-CGC- -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 160309 | 0.68 | 0.911696 |
Target: 5'- cGGUgggcacgGCCauCGGAgCCGUGGGCGg -3' miRNA: 3'- -CCAacuaacaCGG--GCCU-GGCACCCGC- -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 139125 | 0.68 | 0.902288 |
Target: 5'- gGGUUGGUUGcagGCCaagcaGGACgUGUGGGa- -3' miRNA: 3'- -CCAACUAACa--CGGg----CCUG-GCACCCgc -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 121907 | 0.68 | 0.89613 |
Target: 5'- gGGgcaGAUg--GCCCGGcCCGUGGGg- -3' miRNA: 3'- -CCaa-CUAacaCGGGCCuGGCACCCgc -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 179453 | 0.68 | 0.883184 |
Target: 5'- aGGUccuUGAgcUGuUGCaggaagCGGGCCGUGGGCa -3' miRNA: 3'- -CCA---ACUa-AC-ACGg-----GCCUGGCACCCGc -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 196948 | 0.69 | 0.869423 |
Target: 5'- cGGUaGcgUGggcgacgGCCCGGgaGCCGgccgGGGCGc -3' miRNA: 3'- -CCAaCuaACa------CGGGCC--UGGCa---CCCGC- -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 126300 | 0.69 | 0.84733 |
Target: 5'- ---cGAUgGUGCCCGuggcGGCgGUGGGCa -3' miRNA: 3'- ccaaCUAaCACGGGC----CUGgCACCCGc -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 120716 | 0.7 | 0.8154 |
Target: 5'- ---aGGUUGUGgCCCuGGACCGUggccaccagGGGCa -3' miRNA: 3'- ccaaCUAACAC-GGG-CCUGGCA---------CCCGc -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 111210 | 0.7 | 0.807019 |
Target: 5'- uGGgcGAUg--GCgCCGGAaaGUGGGCGa -3' miRNA: 3'- -CCaaCUAacaCG-GGCCUggCACCCGC- -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 31498 | 0.7 | 0.798493 |
Target: 5'- gGGUUGGcacagGCCCaGcCCGUGGGCa -3' miRNA: 3'- -CCAACUaaca-CGGGcCuGGCACCCGc -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 232261 | 0.75 | 0.532332 |
Target: 5'- -uUUGGaUGUGCUCGGACCGUGacGGUGg -3' miRNA: 3'- ccAACUaACACGGGCCUGGCAC--CCGC- -5' |
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14282 | 3' | -56.6 | NC_003521.1 | + | 8524 | 1.1 | 0.003891 |
Target: 5'- cGGUUGAUUGUGCCCGGACCGUGGGCGc -3' miRNA: 3'- -CCAACUAACACGGGCCUGGCACCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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