miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 90729 0.72 0.430036
Target:  5'- aCCCGCUCuguucCCGCAUAGCuGaUCCCGUa -3'
miRNA:   3'- -GGGCGAGu----GGUGUGUCGuCgGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 137155 0.72 0.43843
Target:  5'- gCCCGCcaUgGCCGCggccGCAGCGGCCgCCGc -3'
miRNA:   3'- -GGGCG--AgUGGUG----UGUCGUCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 45480 0.72 0.446917
Target:  5'- aCCCgGCcCACCAcCACGGCAGCCUUCu- -3'
miRNA:   3'- -GGG-CGaGUGGU-GUGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 126725 0.72 0.455493
Target:  5'- gCCG-UCACCGCACAGCAGCCgUg-- -3'
miRNA:   3'- gGGCgAGUGGUGUGUCGUCGGgGgca -5'
14283 5' -61.4 NC_003521.1 + 187320 0.72 0.43843
Target:  5'- gCCGCUgcgaCGCCGCAgCAGCGGCCUCgaCGUg -3'
miRNA:   3'- gGGCGA----GUGGUGU-GUCGUCGGGG--GCA- -5'
14283 5' -61.4 NC_003521.1 + 34696 0.72 0.43843
Target:  5'- gCCCGUUCucagcAUCGCGCAGCAGCUgaCCGg -3'
miRNA:   3'- -GGGCGAG-----UGGUGUGUCGUCGGg-GGCa -5'
14283 5' -61.4 NC_003521.1 + 160329 0.72 0.421738
Target:  5'- gCCGUggGCgGCGCGGUGGCCUCCGUc -3'
miRNA:   3'- gGGCGagUGgUGUGUCGUCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 136927 0.72 0.421738
Target:  5'- uCCCGUUaccugACCGCGCGGCAGCCCa--- -3'
miRNA:   3'- -GGGCGAg----UGGUGUGUCGUCGGGggca -5'
14283 5' -61.4 NC_003521.1 + 130731 0.72 0.455493
Target:  5'- gCCCGCUUACCgcaGCGCGGUagagcuGGCCUUCGg -3'
miRNA:   3'- -GGGCGAGUGG---UGUGUCG------UCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 142605 0.72 0.455493
Target:  5'- cCCCGcCUC-CCACGCcGCuGCCCgCCGa -3'
miRNA:   3'- -GGGC-GAGuGGUGUGuCGuCGGG-GGCa -5'
14283 5' -61.4 NC_003521.1 + 22201 0.72 0.455493
Target:  5'- gCCGCUuacCGCCGCGCgcuGGCGGCCgaaCCGUa -3'
miRNA:   3'- gGGCGA---GUGGUGUG---UCGUCGGg--GGCA- -5'
14283 5' -61.4 NC_003521.1 + 117374 0.71 0.527023
Target:  5'- aCCCGCggUCcCCGCuACGGC-GCCUCCGUc -3'
miRNA:   3'- -GGGCG--AGuGGUG-UGUCGuCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 112436 0.71 0.527023
Target:  5'- gCCCGCUCagGCgGCccaGGCGGCCCUgGUg -3'
miRNA:   3'- -GGGCGAG--UGgUGug-UCGUCGGGGgCA- -5'
14283 5' -61.4 NC_003521.1 + 117655 0.71 0.51783
Target:  5'- cCCCGC-CGCCGCcgccaccucaGCAGCAGCaCCaCCa- -3'
miRNA:   3'- -GGGCGaGUGGUG----------UGUCGUCG-GG-GGca -5'
14283 5' -61.4 NC_003521.1 + 74170 0.71 0.51783
Target:  5'- gCCGCUgGCCgacuGCGCcGCGGCgCCCGg -3'
miRNA:   3'- gGGCGAgUGG----UGUGuCGUCGgGGGCa -5'
14283 5' -61.4 NC_003521.1 + 101394 0.71 0.508701
Target:  5'- gCCGCUUgacgGCCACGCAGgAGagCCCGUg -3'
miRNA:   3'- gGGCGAG----UGGUGUGUCgUCggGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 74702 0.71 0.499641
Target:  5'- aCgGCggCGCCGCgGCAGCGGCUCCCu- -3'
miRNA:   3'- gGgCGa-GUGGUG-UGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 4448 0.71 0.473789
Target:  5'- gCCCGaggcgaucugaaggCACCGC-CuGCGGCCCCCGa -3'
miRNA:   3'- -GGGCga------------GUGGUGuGuCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 129238 0.71 0.472909
Target:  5'- gCCGCUgGCCACGC-GCGGCaCCUGg -3'
miRNA:   3'- gGGCGAgUGGUGUGuCGUCGgGGGCa -5'
14283 5' -61.4 NC_003521.1 + 115093 0.71 0.472909
Target:  5'- cCCUGCUC-CUGCGCcgucGCcGCCCCCGUc -3'
miRNA:   3'- -GGGCGAGuGGUGUGu---CGuCGGGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.