miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 221160 0.7 0.545586
Target:  5'- --gGCUCgGCCcaGCGCAGCAGCCCCa-- -3'
miRNA:   3'- gggCGAG-UGG--UGUGUCGUCGGGGgca -5'
14283 5' -61.4 NC_003521.1 + 218875 0.67 0.734981
Target:  5'- gCCgCGCUCGCC-CACuAGCuccagcccgaGGCCgCCCGc -3'
miRNA:   3'- -GG-GCGAGUGGuGUG-UCG----------UCGG-GGGCa -5'
14283 5' -61.4 NC_003521.1 + 218463 0.66 0.762096
Target:  5'- gCCGg-CACCACgccgugggcGCAGUGGCCCCgGa -3'
miRNA:   3'- gGGCgaGUGGUG---------UGUCGUCGGGGgCa -5'
14283 5' -61.4 NC_003521.1 + 215265 0.66 0.788301
Target:  5'- cCCCGCggcCGCCuGCACAaCAGCgUCCGc -3'
miRNA:   3'- -GGGCGa--GUGG-UGUGUcGUCGgGGGCa -5'
14283 5' -61.4 NC_003521.1 + 214027 0.7 0.545586
Target:  5'- gCCGUUC-CCAUaccuGCGGUGGCCCCCc- -3'
miRNA:   3'- gGGCGAGuGGUG----UGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 212948 0.66 0.770941
Target:  5'- gCCCGC-CuCCAUGCGGUcgaGGUCCuCCGUg -3'
miRNA:   3'- -GGGCGaGuGGUGUGUCG---UCGGG-GGCA- -5'
14283 5' -61.4 NC_003521.1 + 212230 0.66 0.805168
Target:  5'- aUgGUggCGgUGCGCAGCAGCCCgCCGUc -3'
miRNA:   3'- gGgCGa-GUgGUGUGUCGUCGGG-GGCA- -5'
14283 5' -61.4 NC_003521.1 + 210037 0.69 0.640641
Target:  5'- --aGCUCugCACACGGUAacgagacacauuGUCCCCGa -3'
miRNA:   3'- gggCGAGugGUGUGUCGU------------CGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 209919 0.67 0.7165
Target:  5'- aCCGCUCucgccuGCCGCAguuCAGCucGGCCCUCu- -3'
miRNA:   3'- gGGCGAG------UGGUGU---GUCG--UCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 209217 0.68 0.677891
Target:  5'- aUCCGC-CACCugACGGUGGacgacauCUCCCGUa -3'
miRNA:   3'- -GGGCGaGUGGugUGUCGUC-------GGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 207716 0.67 0.725776
Target:  5'- gCCCGCUaCGCCGuCAuCGGCuGGCUggagCCCGUg -3'
miRNA:   3'- -GGGCGA-GUGGU-GU-GUCG-UCGG----GGGCA- -5'
14283 5' -61.4 NC_003521.1 + 207023 0.66 0.779679
Target:  5'- gCCGCUCucgucacucuACCuGCGCgGGCAGCCCaaGUu -3'
miRNA:   3'- gGGCGAG----------UGG-UGUG-UCGUCGGGggCA- -5'
14283 5' -61.4 NC_003521.1 + 206887 0.73 0.389534
Target:  5'- gCCGCgcaCGCCGCACAGCAGCaCCauGg -3'
miRNA:   3'- gGGCGa--GUGGUGUGUCGUCG-GGggCa -5'
14283 5' -61.4 NC_003521.1 + 205771 0.66 0.787444
Target:  5'- aCCUGUgugguggCGCCGCACGGCAugagcguGCCCaaCCGc -3'
miRNA:   3'- -GGGCGa------GUGGUGUGUCGU-------CGGG--GGCa -5'
14283 5' -61.4 NC_003521.1 + 204878 0.69 0.621479
Target:  5'- cUCCGCUUucgcgauugGCCGCGCGGCgggacgguGGCCgCCGa -3'
miRNA:   3'- -GGGCGAG---------UGGUGUGUCG--------UCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 204470 0.66 0.779679
Target:  5'- gCCGC--GCCACGcCAGCccgAGCCCCUa- -3'
miRNA:   3'- gGGCGagUGGUGU-GUCG---UCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 203984 0.68 0.678841
Target:  5'- -gUGCUCuACCcgGCACAGCAGCgccggCCCGUg -3'
miRNA:   3'- ggGCGAG-UGG--UGUGUCGUCGg----GGGCA- -5'
14283 5' -61.4 NC_003521.1 + 203445 0.68 0.669324
Target:  5'- cCCCGC-CGCCucgaACACcGCAGUCgCCGa -3'
miRNA:   3'- -GGGCGaGUGG----UGUGuCGUCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 203410 0.7 0.573803
Target:  5'- -gCGCcgCGCCACACGGUcaGGCCCgUGUa -3'
miRNA:   3'- ggGCGa-GUGGUGUGUCG--UCGGGgGCA- -5'
14283 5' -61.4 NC_003521.1 + 202960 0.66 0.770941
Target:  5'- aCCGCUCAguCCGCAgGcCAGCCUgUGUa -3'
miRNA:   3'- gGGCGAGU--GGUGUgUcGUCGGGgGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.