miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 8257 1.09 0.001643
Target:  5'- cCCCGCUCACCACACAGCAGCCCCCGUa -3'
miRNA:   3'- -GGGCGAGUGGUGUGUCGUCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 191716 0.69 0.620521
Target:  5'- gCCGCggUCACCACGC-GCAcuuuguggauaucGCCCCCc- -3'
miRNA:   3'- gGGCG--AGUGGUGUGuCGU-------------CGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 24546 0.69 0.618606
Target:  5'- gUCCGCUCcacgagcuggcgcuACUACuCGGCGGCCUCCu- -3'
miRNA:   3'- -GGGCGAG--------------UGGUGuGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 214027 0.7 0.545586
Target:  5'- gCCGUUC-CCAUaccuGCGGUGGCCCCCc- -3'
miRNA:   3'- gGGCGAGuGGUG----UGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 197017 0.72 0.455493
Target:  5'- aCCCgGCUgCugCgACAUGGCGGCCCCCc- -3'
miRNA:   3'- -GGG-CGA-GugG-UGUGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 23431 0.68 0.65978
Target:  5'- gCCGCUCAgCCugGCGGU-GCCCaCgGUg -3'
miRNA:   3'- gGGCGAGU-GGugUGUCGuCGGG-GgCA- -5'
14283 5' -61.4 NC_003521.1 + 204878 0.69 0.621479
Target:  5'- cUCCGCUUucgcgauugGCCGCGCGGCgggacgguGGCCgCCGa -3'
miRNA:   3'- -GGGCGAG---------UGGUGUGUCG--------UCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 136927 0.72 0.421738
Target:  5'- uCCCGUUaccugACCGCGCGGCAGCCCa--- -3'
miRNA:   3'- -GGGCGAg----UGGUGUGUCGUCGGGggca -5'
14283 5' -61.4 NC_003521.1 + 44044 0.7 0.583288
Target:  5'- uCCCGUUUACCGCGCccGCGGUCgCgCCGg -3'
miRNA:   3'- -GGGCGAGUGGUGUGu-CGUCGG-G-GGCa -5'
14283 5' -61.4 NC_003521.1 + 129412 0.7 0.561527
Target:  5'- gCCCGCUUgcagaaaugggggaGCCGCuGCAGCGcGUCCCCu- -3'
miRNA:   3'- -GGGCGAG--------------UGGUG-UGUCGU-CGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 103512 0.73 0.413537
Target:  5'- aCUCGgggUCGCCGCGCAGCAGCCgcgccaCCCGc -3'
miRNA:   3'- -GGGCg--AGUGGUGUGUCGUCGG------GGGCa -5'
14283 5' -61.4 NC_003521.1 + 181564 0.73 0.405435
Target:  5'- gCgCGCUuacgaaCGCC-CGCAGCAGCCCCaCGUu -3'
miRNA:   3'- -GgGCGA------GUGGuGUGUCGUCGGGG-GCA- -5'
14283 5' -61.4 NC_003521.1 + 149364 0.68 0.65978
Target:  5'- aCCCGCgagCugCGCGCGuauGCgcgcauagaaAGCCCCCa- -3'
miRNA:   3'- -GGGCGa--GugGUGUGU---CG----------UCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 137731 0.68 0.65978
Target:  5'- aUCCGCccccuUCGCauccccaGCAGCAGCCCUCGc -3'
miRNA:   3'- -GGGCG-----AGUGgug----UGUCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 117210 0.69 0.611905
Target:  5'- gCCGCU-GCUACgGCGGCuGCCCCUGc -3'
miRNA:   3'- gGGCGAgUGGUG-UGUCGuCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 13929 0.71 0.472909
Target:  5'- gCCgCGCUgGCCGC-CGuGguGCCCCCGc -3'
miRNA:   3'- -GG-GCGAgUGGUGuGU-CguCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 22201 0.72 0.455493
Target:  5'- gCCGCUuacCGCCGCGCgcuGGCGGCCgaaCCGUa -3'
miRNA:   3'- gGGCGA---GUGGUGUG---UCGUCGGg--GGCA- -5'
14283 5' -61.4 NC_003521.1 + 16396 0.73 0.389534
Target:  5'- aCCGCUCgcccACCACGCAGC-GCCUggCCGg -3'
miRNA:   3'- gGGCGAG----UGGUGUGUCGuCGGG--GGCa -5'
14283 5' -61.4 NC_003521.1 + 166641 0.7 0.552133
Target:  5'- gCCGCgCGCCgggcgccgcgGCGCAGCGGCcagcggcaccugggCCCCGUg -3'
miRNA:   3'- gGGCGaGUGG----------UGUGUCGUCG--------------GGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 105428 0.69 0.592804
Target:  5'- uCCCGCcCGCCucgGCACGGUuuGGCgCCCGc -3'
miRNA:   3'- -GGGCGaGUGG---UGUGUCG--UCGgGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.