miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 152346 0.66 0.770941
Target:  5'- aCCCGCcCACCcucuucaacuCGCuGCAGCCCgacgCCGa -3'
miRNA:   3'- -GGGCGaGUGGu---------GUGuCGUCGGG----GGCa -5'
14283 5' -61.4 NC_003521.1 + 128042 0.66 0.779679
Target:  5'- gCCCGUagGCggccagcaggCACAUGGCGGCCUCCa- -3'
miRNA:   3'- -GGGCGagUG----------GUGUGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 140110 0.66 0.805168
Target:  5'- cCCCGcCUCcuccaucagcgGCCGCgGCGGC-GCCUCCGc -3'
miRNA:   3'- -GGGC-GAG-----------UGGUG-UGUCGuCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 19015 0.66 0.796799
Target:  5'- gCCCGCccCGCCgACGgAGCccauGCCCgCCGa -3'
miRNA:   3'- -GGGCGa-GUGG-UGUgUCGu---CGGG-GGCa -5'
14283 5' -61.4 NC_003521.1 + 17358 0.66 0.788301
Target:  5'- gCCGUgaCGCCgGCGCGGCGGCCCagacuCGa -3'
miRNA:   3'- gGGCGa-GUGG-UGUGUCGUCGGGg----GCa -5'
14283 5' -61.4 NC_003521.1 + 195532 0.66 0.762096
Target:  5'- uCCgGCUCcUgGCcCAGCGGCgCCCGg -3'
miRNA:   3'- -GGgCGAGuGgUGuGUCGUCGgGGGCa -5'
14283 5' -61.4 NC_003521.1 + 212948 0.66 0.770941
Target:  5'- gCCCGC-CuCCAUGCGGUcgaGGUCCuCCGUg -3'
miRNA:   3'- -GGGCGaGuGGUGUGUCG---UCGGG-GGCA- -5'
14283 5' -61.4 NC_003521.1 + 80988 0.66 0.788301
Target:  5'- -aCGCUCGcgccuCCGCGCAGC-GCCUCaCGg -3'
miRNA:   3'- ggGCGAGU-----GGUGUGUCGuCGGGG-GCa -5'
14283 5' -61.4 NC_003521.1 + 207023 0.66 0.779679
Target:  5'- gCCGCUCucgucacucuACCuGCGCgGGCAGCCCaaGUu -3'
miRNA:   3'- gGGCGAG----------UGG-UGUG-UCGUCGGGggCA- -5'
14283 5' -61.4 NC_003521.1 + 102103 0.66 0.788301
Target:  5'- cUCCGgacgCACCAC-CAGCcaGGCgCCCGUg -3'
miRNA:   3'- -GGGCga--GUGGUGuGUCG--UCGgGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 205771 0.66 0.787444
Target:  5'- aCCUGUgugguggCGCCGCACGGCAugagcguGCCCaaCCGc -3'
miRNA:   3'- -GGGCGa------GUGGUGUGUCGU-------CGGG--GGCa -5'
14283 5' -61.4 NC_003521.1 + 135601 0.66 0.779679
Target:  5'- gCCCGCUuuuucuugaCGCCGCGCAGCucgcgGGCggaUCCCa- -3'
miRNA:   3'- -GGGCGA---------GUGGUGUGUCG-----UCG---GGGGca -5'
14283 5' -61.4 NC_003521.1 + 166027 0.66 0.779679
Target:  5'- gUCCGCgucUCGCCGCuACcGCuGCCgCCGUc -3'
miRNA:   3'- -GGGCG---AGUGGUG-UGuCGuCGGgGGCA- -5'
14283 5' -61.4 NC_003521.1 + 222047 0.66 0.796799
Target:  5'- aUCgGCggggggCACCAgccguCGCAGCAGCgaCCCGUc -3'
miRNA:   3'- -GGgCGa-----GUGGU-----GUGUCGUCGg-GGGCA- -5'
14283 5' -61.4 NC_003521.1 + 215265 0.66 0.788301
Target:  5'- cCCCGCggcCGCCuGCACAaCAGCgUCCGc -3'
miRNA:   3'- -GGGCGa--GUGG-UGUGUcGUCGgGGGCa -5'
14283 5' -61.4 NC_003521.1 + 54289 0.66 0.788301
Target:  5'- cCCUGC-CuCC-CACGG-AGCCCCCGc -3'
miRNA:   3'- -GGGCGaGuGGuGUGUCgUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 131313 0.66 0.762096
Target:  5'- aCCGUcggcggcgUCACCugGCcguGCAGCgcuucgCCCCGUg -3'
miRNA:   3'- gGGCG--------AGUGGugUGu--CGUCG------GGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 166752 0.66 0.762096
Target:  5'- cCUCGCcCGCCAgACAGCGGCgCgUGa -3'
miRNA:   3'- -GGGCGaGUGGUgUGUCGUCGgGgGCa -5'
14283 5' -61.4 NC_003521.1 + 218463 0.66 0.762096
Target:  5'- gCCGg-CACCACgccgugggcGCAGUGGCCCCgGa -3'
miRNA:   3'- gGGCgaGUGGUG---------UGUCGUCGGGGgCa -5'
14283 5' -61.4 NC_003521.1 + 235096 0.66 0.770941
Target:  5'- uCUCGCgcggaCACUACcacccccuagcgAUAGaCAGCCCCCGg -3'
miRNA:   3'- -GGGCGa----GUGGUG------------UGUC-GUCGGGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.