miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 74702 0.71 0.499641
Target:  5'- aCgGCggCGCCGCgGCAGCGGCUCCCu- -3'
miRNA:   3'- gGgCGa-GUGGUG-UGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 60425 0.71 0.499641
Target:  5'- gCCGCcagCACCAC-CAGCAGUaCUCCGg -3'
miRNA:   3'- gGGCGa--GUGGUGuGUCGUCG-GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 101394 0.71 0.508701
Target:  5'- gCCGCUUgacgGCCACGCAGgAGagCCCGUg -3'
miRNA:   3'- gGGCGAG----UGGUGUGUCgUCggGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 117655 0.71 0.51783
Target:  5'- cCCCGC-CGCCGCcgccaccucaGCAGCAGCaCCaCCa- -3'
miRNA:   3'- -GGGCGaGUGGUG----------UGUCGUCG-GG-GGca -5'
14283 5' -61.4 NC_003521.1 + 74170 0.71 0.51783
Target:  5'- gCCGCUgGCCgacuGCGCcGCGGCgCCCGg -3'
miRNA:   3'- gGGCGAgUGG----UGUGuCGUCGgGGGCa -5'
14283 5' -61.4 NC_003521.1 + 117374 0.71 0.527023
Target:  5'- aCCCGCggUCcCCGCuACGGC-GCCUCCGUc -3'
miRNA:   3'- -GGGCG--AGuGGUG-UGUCGuCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 112436 0.71 0.527023
Target:  5'- gCCCGCUCagGCgGCccaGGCGGCCCUgGUg -3'
miRNA:   3'- -GGGCGAG--UGgUGug-UCGUCGGGGgCA- -5'
14283 5' -61.4 NC_003521.1 + 141636 0.7 0.536276
Target:  5'- cUCCGC-CGCCAC-CuuCAGCCCCCa- -3'
miRNA:   3'- -GGGCGaGUGGUGuGucGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 221160 0.7 0.545586
Target:  5'- --gGCUCgGCCcaGCGCAGCAGCCCCa-- -3'
miRNA:   3'- gggCGAG-UGG--UGUGUCGUCGGGGgca -5'
14283 5' -61.4 NC_003521.1 + 214027 0.7 0.545586
Target:  5'- gCCGUUC-CCAUaccuGCGGUGGCCCCCc- -3'
miRNA:   3'- gGGCGAGuGGUG----UGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 166641 0.7 0.552133
Target:  5'- gCCGCgCGCCgggcgccgcgGCGCAGCGGCcagcggcaccugggCCCCGUg -3'
miRNA:   3'- gGGCGaGUGG----------UGUGUCGUCG--------------GGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 70537 0.7 0.554947
Target:  5'- uCgCGCUCggccgGCCgACACAGCAGCCaCUCGc -3'
miRNA:   3'- -GgGCGAG-----UGG-UGUGUCGUCGG-GGGCa -5'
14283 5' -61.4 NC_003521.1 + 72581 0.7 0.554947
Target:  5'- gUCGC-CAUCGCAacCGGCGGCUCCCGc -3'
miRNA:   3'- gGGCGaGUGGUGU--GUCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 153583 0.7 0.554947
Target:  5'- gCCGCUcCACCACcugcaGCAGCAGCgCCa-- -3'
miRNA:   3'- gGGCGA-GUGGUG-----UGUCGUCGgGGgca -5'
14283 5' -61.4 NC_003521.1 + 225602 0.7 0.554947
Target:  5'- uCgCGCUCgGCCGC-CuGCAGCCCCaCGa -3'
miRNA:   3'- -GgGCGAG-UGGUGuGuCGUCGGGG-GCa -5'
14283 5' -61.4 NC_003521.1 + 129412 0.7 0.561527
Target:  5'- gCCCGCUUgcagaaaugggggaGCCGCuGCAGCGcGUCCCCu- -3'
miRNA:   3'- -GGGCGAG--------------UGGUG-UGUCGU-CGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 203410 0.7 0.573803
Target:  5'- -gCGCcgCGCCACACGGUcaGGCCCgUGUa -3'
miRNA:   3'- ggGCGa-GUGGUGUGUCG--UCGGGgGCA- -5'
14283 5' -61.4 NC_003521.1 + 44044 0.7 0.583288
Target:  5'- uCCCGUUUACCGCGCccGCGGUCgCgCCGg -3'
miRNA:   3'- -GGGCGAGUGGUGUGu-CGUCGG-G-GGCa -5'
14283 5' -61.4 NC_003521.1 + 146914 0.7 0.583288
Target:  5'- gCCGCUUGCCGCGacCAGCcacgcccauGCCCUCGa -3'
miRNA:   3'- gGGCGAGUGGUGU--GUCGu--------CGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 186646 0.69 0.592804
Target:  5'- gCUGCUCcuCCgguugACACAGgGGCCCCCa- -3'
miRNA:   3'- gGGCGAGu-GG-----UGUGUCgUCGGGGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.