miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 56668 0.77 0.242898
Target:  5'- uCCCGCUCGCgCACcaggucGCAGUAGCCgCCCa- -3'
miRNA:   3'- -GGGCGAGUG-GUG------UGUCGUCGG-GGGca -5'
14283 5' -61.4 NC_003521.1 + 59376 0.66 0.804337
Target:  5'- gCCGCUggaCGCCGCGCAGCAcuuguacGaCCaCCUGg -3'
miRNA:   3'- gGGCGA---GUGGUGUGUCGU-------C-GG-GGGCa -5'
14283 5' -61.4 NC_003521.1 + 59992 0.66 0.805168
Target:  5'- aCCgGCUCuuCAC-CGGCAGCCUgCa- -3'
miRNA:   3'- -GGgCGAGugGUGuGUCGUCGGGgGca -5'
14283 5' -61.4 NC_003521.1 + 60425 0.71 0.499641
Target:  5'- gCCGCcagCACCAC-CAGCAGUaCUCCGg -3'
miRNA:   3'- gGGCGa--GUGGUGuGUCGUCG-GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 62925 0.67 0.753148
Target:  5'- uCCCGCUCGCCcCGCucGUuccGCCaCCCa- -3'
miRNA:   3'- -GGGCGAGUGGuGUGu-CGu--CGG-GGGca -5'
14283 5' -61.4 NC_003521.1 + 64208 0.76 0.265682
Target:  5'- aCCUGCUgGCCACGCAGCAGCgCgaggaCGUg -3'
miRNA:   3'- -GGGCGAgUGGUGUGUCGUCGgGg----GCA- -5'
14283 5' -61.4 NC_003521.1 + 65783 0.67 0.725776
Target:  5'- aCCGC-CGCCGgACaacuucGGcCGGCCCCUGUu -3'
miRNA:   3'- gGGCGaGUGGUgUG------UC-GUCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 68013 0.66 0.761205
Target:  5'- cCCCaGCUgcgugagccucacCGCCACggGCGGCGugguccgcggcGCCCCCGg -3'
miRNA:   3'- -GGG-CGA-------------GUGGUG--UGUCGU-----------CGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 68553 0.66 0.788301
Target:  5'- gCCGCcaACUAUcaGCAGCAGCUgCCGg -3'
miRNA:   3'- gGGCGagUGGUG--UGUCGUCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 69355 0.68 0.697767
Target:  5'- gCCCGuCUgACagcgcgaGCACAGCAGUCCguguCCGUg -3'
miRNA:   3'- -GGGC-GAgUGg------UGUGUCGUCGGG----GGCA- -5'
14283 5' -61.4 NC_003521.1 + 70537 0.7 0.554947
Target:  5'- uCgCGCUCggccgGCCgACACAGCAGCCaCUCGc -3'
miRNA:   3'- -GgGCGAG-----UGG-UGUGUCGUCGG-GGGCa -5'
14283 5' -61.4 NC_003521.1 + 71401 0.67 0.725776
Target:  5'- gUCCGCgugaGCgAgGCGGCGGCCCCg-- -3'
miRNA:   3'- -GGGCGag--UGgUgUGUCGUCGGGGgca -5'
14283 5' -61.4 NC_003521.1 + 72581 0.7 0.554947
Target:  5'- gUCGC-CAUCGCAacCGGCGGCUCCCGc -3'
miRNA:   3'- gGGCGaGUGGUGU--GUCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 72691 0.67 0.725776
Target:  5'- cCCCGUcCACC-CACGGCGcugucGUCCUCGg -3'
miRNA:   3'- -GGGCGaGUGGuGUGUCGU-----CGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 74170 0.71 0.51783
Target:  5'- gCCGCUgGCCgacuGCGCcGCGGCgCCCGg -3'
miRNA:   3'- gGGCGAgUGG----UGUGuCGUCGgGGGCa -5'
14283 5' -61.4 NC_003521.1 + 74584 0.71 0.490654
Target:  5'- gCCCGCUCGCCGgGCGGCAucacGCUCUUc- -3'
miRNA:   3'- -GGGCGAGUGGUgUGUCGU----CGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 74702 0.71 0.499641
Target:  5'- aCgGCggCGCCGCgGCAGCGGCUCCCu- -3'
miRNA:   3'- gGgCGa-GUGGUG-UGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 75321 0.66 0.796799
Target:  5'- aCUGCgUCACCcagauGCugACGGCGGCCCgCGa -3'
miRNA:   3'- gGGCG-AGUGG-----UG--UGUCGUCGGGgGCa -5'
14283 5' -61.4 NC_003521.1 + 75689 0.68 0.669324
Target:  5'- gCCGg-CACCGCGgucCAGCCCCCGUc -3'
miRNA:   3'- gGGCgaGUGGUGUgucGUCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 76020 0.68 0.669324
Target:  5'- aCUCGgUCGcCCACcgACGGCAGCuCCUCGg -3'
miRNA:   3'- -GGGCgAGU-GGUG--UGUCGUCG-GGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.