miRNA display CGI


Results 61 - 80 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 138450 0.66 0.791716
Target:  5'- cCCCGCgcgugCAUCGCcgGCGGCGccacaucugccaccuGCCgCCCGUc -3'
miRNA:   3'- -GGGCGa----GUGGUG--UGUCGU---------------CGG-GGGCA- -5'
14283 5' -61.4 NC_003521.1 + 113156 0.66 0.800163
Target:  5'- aCCCGC-CGCCugcuCGCGGCcaagaugggccgcgaGGUgCCCGUc -3'
miRNA:   3'- -GGGCGaGUGGu---GUGUCG---------------UCGgGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 59376 0.66 0.804337
Target:  5'- gCCGCUggaCGCCGCGCAGCAcuuguacGaCCaCCUGg -3'
miRNA:   3'- gGGCGA---GUGGUGUGUCGU-------C-GG-GGGCa -5'
14283 5' -61.4 NC_003521.1 + 59992 0.66 0.805168
Target:  5'- aCCgGCUCuuCAC-CGGCAGCCUgCa- -3'
miRNA:   3'- -GGgCGAGugGUGuGUCGUCGGGgGca -5'
14283 5' -61.4 NC_003521.1 + 75321 0.66 0.796799
Target:  5'- aCUGCgUCACCcagauGCugACGGCGGCCCgCGa -3'
miRNA:   3'- gGGCG-AGUGG-----UG--UGUCGUCGGGgGCa -5'
14283 5' -61.4 NC_003521.1 + 90268 0.66 0.796799
Target:  5'- aCCuaUUugCAUACuaGGUAcGCCCCCGUa -3'
miRNA:   3'- gGGcgAGugGUGUG--UCGU-CGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 164281 0.67 0.752248
Target:  5'- gCCGCUCcuggacaGCCAcCGCAGCAGCagCCa- -3'
miRNA:   3'- gGGCGAG-------UGGU-GUGUCGUCGggGGca -5'
14283 5' -61.4 NC_003521.1 + 89719 0.67 0.7165
Target:  5'- cCCCGC-CAUCcCcCAGCGGCCcgaCCCGa -3'
miRNA:   3'- -GGGCGaGUGGuGuGUCGUCGG---GGGCa -5'
14283 5' -61.4 NC_003521.1 + 54042 0.67 0.707162
Target:  5'- cCCCGCcgcCGCCAcCACcGCcGCCUCCGc -3'
miRNA:   3'- -GGGCGa--GUGGU-GUGuCGuCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 26256 0.67 0.753148
Target:  5'- aCCC-CUCGCCccuGCugcuCAGCuGCaCCCCGg -3'
miRNA:   3'- -GGGcGAGUGG---UGu---GUCGuCG-GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 12093 0.67 0.745016
Target:  5'- gCUGCUCACCACGCAGCccgacaacaugaucuGCgaCCUGc -3'
miRNA:   3'- gGGCGAGUGGUGUGUCGu--------------CGg-GGGCa -5'
14283 5' -61.4 NC_003521.1 + 229240 0.67 0.744107
Target:  5'- aCCCGCggGCCGCGgAGguGCUUgCGg -3'
miRNA:   3'- -GGGCGagUGGUGUgUCguCGGGgGCa -5'
14283 5' -61.4 NC_003521.1 + 138042 0.67 0.744107
Target:  5'- gCCGCcggcgccgUCAUCGCGCAGCcGCUgCCGc -3'
miRNA:   3'- gGGCG--------AGUGGUGUGUCGuCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 135816 0.67 0.744107
Target:  5'- uCCCGUUC-CCGCuccuGCAGCAGCgaagaagacucCUCCGa -3'
miRNA:   3'- -GGGCGAGuGGUG----UGUCGUCG-----------GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 235140 0.67 0.744107
Target:  5'- gCCCGUUC-CC-CGCGGacgGGCgCCCGUg -3'
miRNA:   3'- -GGGCGAGuGGuGUGUCg--UCGgGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 162334 0.67 0.741378
Target:  5'- aCCCGCagGCgGCgacugcgggcguggGCGcGCAGCCCCCc- -3'
miRNA:   3'- -GGGCGagUGgUG--------------UGU-CGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 115543 0.67 0.741378
Target:  5'- gCgGCUCGCCugACGgagcgccgugcugcGCGgacguugaucucGCCCCCGUg -3'
miRNA:   3'- gGgCGAGUGGugUGU--------------CGU------------CGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 141933 0.67 0.734981
Target:  5'- cUCCGC-CGCgACgACGGC-GCCCCCu- -3'
miRNA:   3'- -GGGCGaGUGgUG-UGUCGuCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 85205 0.67 0.725776
Target:  5'- aCCGC-CGCCGagaACAGCGGUCgCCa- -3'
miRNA:   3'- gGGCGaGUGGUg--UGUCGUCGGgGGca -5'
14283 5' -61.4 NC_003521.1 + 207716 0.67 0.725776
Target:  5'- gCCCGCUaCGCCGuCAuCGGCuGGCUggagCCCGUg -3'
miRNA:   3'- -GGGCGA-GUGGU-GU-GUCG-UCGG----GGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.