miRNA display CGI


Results 21 - 40 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14284 3' -55.9 NC_003521.1 + 184807 0.66 0.952354
Target:  5'- gGUGGC-CG-CCUCCgacugguggguggAGAaCGCCGUGGa -3'
miRNA:   3'- -CAUCGaGUaGGAGG-------------UCUaGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 111169 0.67 0.948749
Target:  5'- aUAGCgcggCcgCC-CCGGcgacggCGCCGCGGa -3'
miRNA:   3'- cAUCGa---GuaGGaGGUCua----GCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 162609 0.67 0.948749
Target:  5'- --cGCUCGacagCCUCCGacGAgCGCCGCGc -3'
miRNA:   3'- cauCGAGUa---GGAGGU--CUaGCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 181917 0.67 0.948337
Target:  5'- --cGCUCAUCCUgCgcauGGAgacgggcugcgacUCGCCGCGc -3'
miRNA:   3'- cauCGAGUAGGAgG----UCU-------------AGCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 54102 0.67 0.944535
Target:  5'- cUAGCaggUCGUUCUCCAGAccggagccgUCGUCGUGc -3'
miRNA:   3'- cAUCG---AGUAGGAGGUCU---------AGCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 46105 0.67 0.944535
Target:  5'- uGUAGCgCcgCCUCCGGA-CGCaGCGu -3'
miRNA:   3'- -CAUCGaGuaGGAGGUCUaGCGgCGCc -5'
14284 3' -55.9 NC_003521.1 + 166632 0.67 0.940102
Target:  5'- -cGGCgUCGggCCgcgcgCCGGG-CGCCGCGGc -3'
miRNA:   3'- caUCG-AGUa-GGa----GGUCUaGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 94168 0.67 0.940102
Target:  5'- cGUuGC-CGUCCUCCucgccGUCGUCGUGGc -3'
miRNA:   3'- -CAuCGaGUAGGAGGuc---UAGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 166490 0.67 0.935446
Target:  5'- -cAGCgcCAUCCagCGGggCGCCGCGu -3'
miRNA:   3'- caUCGa-GUAGGagGUCuaGCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 91627 0.67 0.935446
Target:  5'- gGUGGCguaGUCCUCguGGcCGCCgGUGGc -3'
miRNA:   3'- -CAUCGag-UAGGAGguCUaGCGG-CGCC- -5'
14284 3' -55.9 NC_003521.1 + 40783 0.67 0.935446
Target:  5'- -aAGCUCGgcgaCUCCGGAcuccCGgCGCGGu -3'
miRNA:   3'- caUCGAGUag--GAGGUCUa---GCgGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 88727 0.67 0.935446
Target:  5'- -cGGgUC-UCCUCgCAGAgccggcgcacgUCGCCGUGGu -3'
miRNA:   3'- caUCgAGuAGGAG-GUCU-----------AGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 41431 0.67 0.935446
Target:  5'- -gGGCUCAUCUUCUcGAccccCGCCGCc- -3'
miRNA:   3'- caUCGAGUAGGAGGuCUa---GCGGCGcc -5'
14284 3' -55.9 NC_003521.1 + 96056 0.67 0.935446
Target:  5'- -gGGCUCGUCgUcCCAGAcCGCCaGCa- -3'
miRNA:   3'- caUCGAGUAGgA-GGUCUaGCGG-CGcc -5'
14284 3' -55.9 NC_003521.1 + 178960 0.67 0.935446
Target:  5'- cGUGGUggUCGUCauggaCAGG-CGCCGCGGu -3'
miRNA:   3'- -CAUCG--AGUAGgag--GUCUaGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 96633 0.67 0.935446
Target:  5'- -cAGCUugcCGUUCUCCAGcgCGCgGCaGGc -3'
miRNA:   3'- caUCGA---GUAGGAGGUCuaGCGgCG-CC- -5'
14284 3' -55.9 NC_003521.1 + 97712 0.67 0.934968
Target:  5'- gGUGGCcgacucgucguccUCAUCCUCCGGcggCGgCUGCGa -3'
miRNA:   3'- -CAUCG-------------AGUAGGAGGUCua-GC-GGCGCc -5'
14284 3' -55.9 NC_003521.1 + 203388 0.67 0.930567
Target:  5'- -cAGCgUCA-CCUUCAGAggcucggCGCCGCGc -3'
miRNA:   3'- caUCG-AGUaGGAGGUCUa------GCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 196469 0.67 0.930567
Target:  5'- -gGGCcgCAgCC-CCAGcgCGUCGCGGa -3'
miRNA:   3'- caUCGa-GUaGGaGGUCuaGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 92607 0.67 0.930567
Target:  5'- uGUGGCaUCcgGUCCUcgCCGGAUCGCUGaCGu -3'
miRNA:   3'- -CAUCG-AG--UAGGA--GGUCUAGCGGC-GCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.