miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14284 5' -65 NC_003521.1 + 40333 0.66 0.681344
Target:  5'- cUCCGCugcgggucccgGGgGGUGGGGGGGuGUuuuugGCgGGg -3'
miRNA:   3'- cAGGCG-----------CCgCCGCCCCCUC-CA-----UGgCC- -5'
14284 5' -65 NC_003521.1 + 50503 0.69 0.499425
Target:  5'- uGUCgGCGGCGGUGGa-GAuGGUACCa- -3'
miRNA:   3'- -CAGgCGCCGCCGCCccCU-CCAUGGcc -5'
14284 5' -65 NC_003521.1 + 53357 0.67 0.580015
Target:  5'- --gCGCGGCGGCGGaGGGGccgacagACCGa -3'
miRNA:   3'- cagGCGCCGCCGCC-CCCUcca----UGGCc -5'
14284 5' -65 NC_003521.1 + 53396 0.67 0.607587
Target:  5'- -gCCGCGGCGaGCaGGGGAuGGcGCguCGGc -3'
miRNA:   3'- caGGCGCCGC-CGcCCCCU-CCaUG--GCC- -5'
14284 5' -65 NC_003521.1 + 55912 0.78 0.152361
Target:  5'- cUCCGaCGGCGGCGGcaacGGGGGUGCCa- -3'
miRNA:   3'- cAGGC-GCCGCCGCCc---CCUCCAUGGcc -5'
14284 5' -65 NC_003521.1 + 60686 0.68 0.561778
Target:  5'- -gCUGCGGcCGcGCGGGGGAcccgGGggcgGCgCGGg -3'
miRNA:   3'- caGGCGCC-GC-CGCCCCCU----CCa---UG-GCC- -5'
14284 5' -65 NC_003521.1 + 67263 0.66 0.662978
Target:  5'- -cCCGUGGCaggagGGCGGgcaGGGAGGacaGCCGc -3'
miRNA:   3'- caGGCGCCG-----CCGCC---CCCUCCa--UGGCc -5'
14284 5' -65 NC_003521.1 + 69706 0.74 0.255148
Target:  5'- uGUCgGUGGCGGCGGcccuGAGGUACgCGGu -3'
miRNA:   3'- -CAGgCGCCGCCGCCcc--CUCCAUG-GCC- -5'
14284 5' -65 NC_003521.1 + 70376 0.76 0.187169
Target:  5'- -gCCGCaGGCGGCGGuaGAGGUAgCGGg -3'
miRNA:   3'- caGGCG-CCGCCGCCccCUCCAUgGCC- -5'
14284 5' -65 NC_003521.1 + 71272 0.66 0.635292
Target:  5'- aUCgGCGGaGGCGGGGGccGcgGCaCGGg -3'
miRNA:   3'- cAGgCGCCgCCGCCCCCucCa-UG-GCC- -5'
14284 5' -65 NC_003521.1 + 72993 0.71 0.40065
Target:  5'- -cCCGCGGCGGuCGugcccGGGGGGGU-CCa- -3'
miRNA:   3'- caGGCGCCGCC-GC-----CCCCUCCAuGGcc -5'
14284 5' -65 NC_003521.1 + 74905 0.66 0.653761
Target:  5'- -aCgGUGGCGGCGGuGGAGucGgcCCGGc -3'
miRNA:   3'- caGgCGCCGCCGCCcCCUC--CauGGCC- -5'
14284 5' -65 NC_003521.1 + 76392 0.67 0.604821
Target:  5'- -gCCGCGGUGGCGcugcuagcaccagcGGcGGugugguGGUGCUGGc -3'
miRNA:   3'- caGGCGCCGCCGC--------------CC-CCu-----CCAUGGCC- -5'
14284 5' -65 NC_003521.1 + 85452 0.69 0.465191
Target:  5'- cGUCCGCGcCGGCGagaaaGGuGGucgucguGGUGCCGGu -3'
miRNA:   3'- -CAGGCGCcGCCGC-----CC-CCu------CCAUGGCC- -5'
14284 5' -65 NC_003521.1 + 87761 0.68 0.525816
Target:  5'- -gCCcCGGCGGCGGaGGAGGc-CUGGg -3'
miRNA:   3'- caGGcGCCGCCGCCcCCUCCauGGCC- -5'
14284 5' -65 NC_003521.1 + 91354 0.72 0.31524
Target:  5'- gGUCgGgaGGaCGGUGGGGGAGGggGCCGa -3'
miRNA:   3'- -CAGgCg-CC-GCCGCCCCCUCCa-UGGCc -5'
14284 5' -65 NC_003521.1 + 91570 0.7 0.440334
Target:  5'- gGUCCGCccacaaggGGCGGUGuguGGGucacGAGGUGCCGa -3'
miRNA:   3'- -CAGGCG--------CCGCCGC---CCC----CUCCAUGGCc -5'
14284 5' -65 NC_003521.1 + 91958 0.7 0.448537
Target:  5'- -cCCGUGGCGGCGaGGGcGGaacCCGGc -3'
miRNA:   3'- caGGCGCCGCCGCcCCCuCCau-GGCC- -5'
14284 5' -65 NC_003521.1 + 92022 0.74 0.249685
Target:  5'- -gCgGCGGCGGCGGcGGuGGGU-CCGGg -3'
miRNA:   3'- caGgCGCCGCCGCC-CCcUCCAuGGCC- -5'
14284 5' -65 NC_003521.1 + 94422 0.67 0.620508
Target:  5'- --aCGCGGCGGCccaugacgucucucaGGGGGuc--GCCGGa -3'
miRNA:   3'- cagGCGCCGCCG---------------CCCCCuccaUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.