miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14284 5' -65 NC_003521.1 + 71272 0.66 0.635292
Target:  5'- aUCgGCGGaGGCGGGGGccGcgGCaCGGg -3'
miRNA:   3'- cAGgCGCCgCCGCCCCCucCa-UG-GCC- -5'
14284 5' -65 NC_003521.1 + 171610 0.67 0.626051
Target:  5'- -cCCGa-GCGGCGGcGGGA-GUGCCGc -3'
miRNA:   3'- caGGCgcCGCCGCC-CCCUcCAUGGCc -5'
14284 5' -65 NC_003521.1 + 6404 0.67 0.626051
Target:  5'- -aCCGCGGCGGCGacGGGucuUGCCGc -3'
miRNA:   3'- caGGCGCCGCCGCc-CCCuccAUGGCc -5'
14284 5' -65 NC_003521.1 + 110150 0.67 0.622356
Target:  5'- uGUCCGCgaacgugacgcugaGGCGGCGGuagcacaGGAGGUugggguggaggccGCUGGc -3'
miRNA:   3'- -CAGGCG--------------CCGCCGCCc------CCUCCA-------------UGGCC- -5'
14284 5' -65 NC_003521.1 + 94422 0.67 0.620508
Target:  5'- --aCGCGGCGGCccaugacgucucucaGGGGGuc--GCCGGa -3'
miRNA:   3'- cagGCGCCGCCG---------------CCCCCuccaUGGCC- -5'
14284 5' -65 NC_003521.1 + 53396 0.67 0.607587
Target:  5'- -gCCGCGGCGaGCaGGGGAuGGcGCguCGGc -3'
miRNA:   3'- caGGCGCCGC-CGcCCCCU-CCaUG--GCC- -5'
14284 5' -65 NC_003521.1 + 122514 0.67 0.607587
Target:  5'- --aCGCGGCGGCGGGcag---GCCGGc -3'
miRNA:   3'- cagGCGCCGCCGCCCccuccaUGGCC- -5'
14284 5' -65 NC_003521.1 + 150016 0.67 0.607587
Target:  5'- -cCCGgGGaaGgGGGGGGGG-GCUGGg -3'
miRNA:   3'- caGGCgCCgcCgCCCCCUCCaUGGCC- -5'
14284 5' -65 NC_003521.1 + 150165 0.67 0.606665
Target:  5'- aUCCGgGGCGuGUccacuaGGGGGuguaccuAGGUACCGc -3'
miRNA:   3'- cAGGCgCCGC-CG------CCCCC-------UCCAUGGCc -5'
14284 5' -65 NC_003521.1 + 76392 0.67 0.604821
Target:  5'- -gCCGCGGUGGCGcugcuagcaccagcGGcGGugugguGGUGCUGGc -3'
miRNA:   3'- caGGCGCCGCCGC--------------CC-CCu-----CCAUGGCC- -5'
14284 5' -65 NC_003521.1 + 164813 0.67 0.598374
Target:  5'- aUCC-CGGagcgcccGCGGGGGAGGaggaACCGGc -3'
miRNA:   3'- cAGGcGCCgc-----CGCCCCCUCCa---UGGCC- -5'
14284 5' -65 NC_003521.1 + 195349 0.67 0.598374
Target:  5'- -gCCGUGGUGGUGGGccGGGUGaaGGu -3'
miRNA:   3'- caGGCGCCGCCGCCCccUCCAUggCC- -5'
14284 5' -65 NC_003521.1 + 145866 0.67 0.598374
Target:  5'- -gCC-CGGCGGCGGGcGGcgccgacgacgAGGccGCCGGc -3'
miRNA:   3'- caGGcGCCGCCGCCC-CC-----------UCCa-UGGCC- -5'
14284 5' -65 NC_003521.1 + 102768 0.67 0.598374
Target:  5'- uGUCCGCGGCGGuCGcGGGcGAcccacgccccGuGcGCCGGc -3'
miRNA:   3'- -CAGGCGCCGCC-GC-CCC-CU----------C-CaUGGCC- -5'
14284 5' -65 NC_003521.1 + 209561 0.67 0.598374
Target:  5'- ---gGUGGCGGCGacgguGGcGGGGGU-CCGGg -3'
miRNA:   3'- caggCGCCGCCGC-----CC-CCUCCAuGGCC- -5'
14284 5' -65 NC_003521.1 + 222986 0.67 0.597454
Target:  5'- cUCCuGCgcccacuugguauGGCGGUGGGGGucGUcguccGCCGGu -3'
miRNA:   3'- cAGG-CG-------------CCGCCGCCCCCucCA-----UGGCC- -5'
14284 5' -65 NC_003521.1 + 169285 0.67 0.597454
Target:  5'- cGUCUuCGGCGGCGGGcucGGUgacgucgGCCGGc -3'
miRNA:   3'- -CAGGcGCCGCCGCCCccuCCA-------UGGCC- -5'
14284 5' -65 NC_003521.1 + 131091 0.67 0.589182
Target:  5'- cUCgCGCGGgcuccggaCGGCGGGGcGGcgcGGcUGCCGGg -3'
miRNA:   3'- cAG-GCGCC--------GCCGCCCC-CU---CC-AUGGCC- -5'
14284 5' -65 NC_003521.1 + 96843 0.67 0.580015
Target:  5'- uUCUGCaGCGGCauGGGGcGGaagGCCGGg -3'
miRNA:   3'- cAGGCGcCGCCGc-CCCCuCCa--UGGCC- -5'
14284 5' -65 NC_003521.1 + 120544 0.67 0.580015
Target:  5'- cUCgGCGGcCGGCggucccGGGGGAGcgcCCGGg -3'
miRNA:   3'- cAGgCGCC-GCCG------CCCCCUCcauGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.