miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14285 3' -54 NC_003521.1 + 29709 0.66 0.988858
Target:  5'- uCCu---CGGCGCCugGCUGCUGAGc--- -3'
miRNA:   3'- -GGucauGCCGCGG--CGGCGACUUuaac -5'
14285 3' -54 NC_003521.1 + 46197 0.66 0.988858
Target:  5'- aCGGUGCuGGUGUCGUgcgCGCUGAu---- -3'
miRNA:   3'- gGUCAUG-CCGCGGCG---GCGACUuuaac -5'
14285 3' -54 NC_003521.1 + 75176 0.66 0.988858
Target:  5'- gCCAGcGCGGCG-UGCUGCUGc----- -3'
miRNA:   3'- -GGUCaUGCCGCgGCGGCGACuuuaac -5'
14285 3' -54 NC_003521.1 + 77503 0.66 0.988858
Target:  5'- gCUAGUGCcGCuCgCGCCGCUGAccgUGg -3'
miRNA:   3'- -GGUCAUGcCGcG-GCGGCGACUuuaAC- -5'
14285 3' -54 NC_003521.1 + 214420 0.66 0.988858
Target:  5'- gCUAGagACGGCGUgggugacggUGCUGCaGAAGUUGa -3'
miRNA:   3'- -GGUCa-UGCCGCG---------GCGGCGaCUUUAAC- -5'
14285 3' -54 NC_003521.1 + 170184 0.66 0.988858
Target:  5'- uUCGGaGCGGUGgUGCCGgUGGAGguagUGg -3'
miRNA:   3'- -GGUCaUGCCGCgGCGGCgACUUUa---AC- -5'
14285 3' -54 NC_003521.1 + 135113 0.66 0.987424
Target:  5'- gCAGgu-GGCGUCGCUGgUGguGUUGg -3'
miRNA:   3'- gGUCaugCCGCGGCGGCgACuuUAAC- -5'
14285 3' -54 NC_003521.1 + 166530 0.66 0.987424
Target:  5'- gUCAGUAgGGC-CCGCaGCUGcgacGGAUUGu -3'
miRNA:   3'- -GGUCAUgCCGcGGCGgCGAC----UUUAAC- -5'
14285 3' -54 NC_003521.1 + 196231 0.66 0.987424
Target:  5'- gCAGcUGCaGGUGUCGCgCGCUGAc---- -3'
miRNA:   3'- gGUC-AUG-CCGCGGCG-GCGACUuuaac -5'
14285 3' -54 NC_003521.1 + 178196 0.66 0.987424
Target:  5'- aCAGgGCGGCGCCGaaGCUc------ -3'
miRNA:   3'- gGUCaUGCCGCGGCggCGAcuuuaac -5'
14285 3' -54 NC_003521.1 + 43475 0.66 0.987424
Target:  5'- gCCAGcGCGGCgGCCG-UGCUGGc---- -3'
miRNA:   3'- -GGUCaUGCCG-CGGCgGCGACUuuaac -5'
14285 3' -54 NC_003521.1 + 13872 0.66 0.987424
Target:  5'- gCGG-GCGGCGCCGCCa-UGGAu--- -3'
miRNA:   3'- gGUCaUGCCGCGGCGGcgACUUuaac -5'
14285 3' -54 NC_003521.1 + 48368 0.66 0.987424
Target:  5'- uCCuGgaaacCGGCGCCGCCGCc------- -3'
miRNA:   3'- -GGuCau---GCCGCGGCGGCGacuuuaac -5'
14285 3' -54 NC_003521.1 + 126150 0.66 0.987424
Target:  5'- gCCAG-GCGGCGUCG-CGCUuGucGUUGu -3'
miRNA:   3'- -GGUCaUGCCGCGGCgGCGA-CuuUAAC- -5'
14285 3' -54 NC_003521.1 + 44780 0.66 0.987424
Target:  5'- gCCGGUGCuGGCccuagGCCGacaaaCGCUGAGc--- -3'
miRNA:   3'- -GGUCAUG-CCG-----CGGCg----GCGACUUuaac -5'
14285 3' -54 NC_003521.1 + 14682 0.66 0.987424
Target:  5'- -----cCGaGUGCCGCCGCUGGuggUGg -3'
miRNA:   3'- ggucauGC-CGCGGCGGCGACUuuaAC- -5'
14285 3' -54 NC_003521.1 + 235128 0.66 0.987424
Target:  5'- cCCGGUgACGGCGCCcguuccCCGCgGAc---- -3'
miRNA:   3'- -GGUCA-UGCCGCGGc-----GGCGaCUuuaac -5'
14285 3' -54 NC_003521.1 + 112335 0.66 0.987424
Target:  5'- gCAGgcCGGCGCgcacagccucaCGCCGCUGc----- -3'
miRNA:   3'- gGUCauGCCGCG-----------GCGGCGACuuuaac -5'
14285 3' -54 NC_003521.1 + 172268 0.66 0.987424
Target:  5'- -----cCGGCaGCUGCUGCUGAuAGUUGg -3'
miRNA:   3'- ggucauGCCG-CGGCGGCGACU-UUAAC- -5'
14285 3' -54 NC_003521.1 + 155090 0.66 0.987424
Target:  5'- gCCaAGUucGCGGCGCUGCaggaGCaGGGcgUGg -3'
miRNA:   3'- -GG-UCA--UGCCGCGGCGg---CGaCUUuaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.