miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14285 5' -61.6 NC_003521.1 + 239486 0.66 0.800683
Target:  5'- aGCCCCaGCCGGuuggaccGAUaCAgccgcgccacucgccGGCGCCGUa -3'
miRNA:   3'- gUGGGG-CGGCCu------CUA-GUa--------------CCGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 214804 0.66 0.799846
Target:  5'- uCACCgCCGUCGG-GcgCcgGGCGCgGc -3'
miRNA:   3'- -GUGG-GGCGGCCuCuaGuaCCGCGgCa -5'
14285 5' -61.6 NC_003521.1 + 211978 0.66 0.799846
Target:  5'- cCGCgCCGCCGcAGcucGUCGUccaGGCGCCGc -3'
miRNA:   3'- -GUGgGGCGGCcUC---UAGUA---CCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 92469 0.66 0.792256
Target:  5'- cUugCCCGCuCGGGGGUCucccagccucuccgGGCGUgGUc -3'
miRNA:   3'- -GugGGGCG-GCCUCUAGua------------CCGCGgCA- -5'
14285 5' -61.6 NC_003521.1 + 13890 0.66 0.791406
Target:  5'- gAUUUCGCCGGGGggCccGGCGCgGa -3'
miRNA:   3'- gUGGGGCGGCCUCuaGuaCCGCGgCa -5'
14285 5' -61.6 NC_003521.1 + 236479 0.66 0.791406
Target:  5'- aGCgaaCCGCCGGcGGcgGUGGCGCCa- -3'
miRNA:   3'- gUGg--GGCGGCCuCUagUACCGCGGca -5'
14285 5' -61.6 NC_003521.1 + 100320 0.66 0.791406
Target:  5'- gACCCCGCUGaGuGA-CGcgGGCGCCu- -3'
miRNA:   3'- gUGGGGCGGC-CuCUaGUa-CCGCGGca -5'
14285 5' -61.6 NC_003521.1 + 182101 0.66 0.791406
Target:  5'- gCACCgCCGCCuGGAGA-CGgugGGCugcgucaagGCCGUc -3'
miRNA:   3'- -GUGG-GGCGG-CCUCUaGUa--CCG---------CGGCA- -5'
14285 5' -61.6 NC_003521.1 + 118935 0.66 0.791406
Target:  5'- uGCCCCaGCCaGGAGccCAUGuCGCUGUa -3'
miRNA:   3'- gUGGGG-CGG-CCUCuaGUACcGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 39863 0.66 0.791406
Target:  5'- gUACUCCaGagaCGGcGAUCG-GGCGCCGUa -3'
miRNA:   3'- -GUGGGG-Cg--GCCuCUAGUaCCGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 92706 0.66 0.791406
Target:  5'- cUACCUggugUGCUGGguaaAGAUagCGUGGCGCCGg -3'
miRNA:   3'- -GUGGG----GCGGCC----UCUA--GUACCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 223666 0.66 0.790554
Target:  5'- gGCCCCGuuGGccagggaGGGUCGggcgaaGcGCGCCGg -3'
miRNA:   3'- gUGGGGCggCC-------UCUAGUa-----C-CGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 77825 0.66 0.789702
Target:  5'- uGCCCgucgaagaugacgcgCGCaUGGGGAUCuuggccagacgggcgAUGGCGCCGg -3'
miRNA:   3'- gUGGG---------------GCG-GCCUCUAG---------------UACCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 172299 0.66 0.78284
Target:  5'- uGCCgCCGuCCGGuG-UCgGUGGCGCCa- -3'
miRNA:   3'- gUGG-GGC-GGCCuCuAG-UACCGCGGca -5'
14285 5' -61.6 NC_003521.1 + 192234 0.66 0.78284
Target:  5'- gACCCggCGCCGcGGGAggGUGGCcguuaGCCGUc -3'
miRNA:   3'- gUGGG--GCGGC-CUCUagUACCG-----CGGCA- -5'
14285 5' -61.6 NC_003521.1 + 125399 0.66 0.780246
Target:  5'- uCACCCCcgcGCCgcggcgcugaguccGGAGGcCGUGGCgGCCGc -3'
miRNA:   3'- -GUGGGG---CGG--------------CCUCUaGUACCG-CGGCa -5'
14285 5' -61.6 NC_003521.1 + 140607 0.66 0.776772
Target:  5'- aCGCUCCGCUucgaGGAGGccguaaauauggcgcUCGUGGCcugcgaaGCCGUg -3'
miRNA:   3'- -GUGGGGCGG----CCUCU---------------AGUACCG-------CGGCA- -5'
14285 5' -61.6 NC_003521.1 + 223715 0.66 0.774155
Target:  5'- gACCUCGCCGGguacgacggcGGGUCcgGUGGCGggaaCGUg -3'
miRNA:   3'- gUGGGGCGGCC----------UCUAG--UACCGCg---GCA- -5'
14285 5' -61.6 NC_003521.1 + 137030 0.66 0.774155
Target:  5'- uCAUCUCGCCGGAG--CAcGGCGgCGa -3'
miRNA:   3'- -GUGGGGCGGCCUCuaGUaCCGCgGCa -5'
14285 5' -61.6 NC_003521.1 + 39436 0.66 0.774155
Target:  5'- uGCCgCUGCCGGccGAgCccGGCGCCGa -3'
miRNA:   3'- gUGG-GGCGGCCu-CUaGuaCCGCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.