miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14285 5' -61.6 NC_003521.1 + 223715 0.66 0.774155
Target:  5'- gACCUCGCCGGguacgacggcGGGUCcgGUGGCGggaaCGUg -3'
miRNA:   3'- gUGGGGCGGCC----------UCUAG--UACCGCg---GCA- -5'
14285 5' -61.6 NC_003521.1 + 137030 0.66 0.774155
Target:  5'- uCAUCUCGCCGGAG--CAcGGCGgCGa -3'
miRNA:   3'- -GUGGGGCGGCCUCuaGUaCCGCgGCa -5'
14285 5' -61.6 NC_003521.1 + 133665 0.66 0.773281
Target:  5'- uGCCCCGCCuGGAGAacuucuaucucugUCAgGuGUGCCuGUa -3'
miRNA:   3'- gUGGGGCGG-CCUCU-------------AGUaC-CGCGG-CA- -5'
14285 5' -61.6 NC_003521.1 + 2462 0.66 0.76536
Target:  5'- gCGCCCCGCUauGGGUacgcgacGGCGCCGg -3'
miRNA:   3'- -GUGGGGCGGccUCUAgua----CCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 148912 0.66 0.76536
Target:  5'- uCGCCgCCGCCGuccuGGAUCcgGGgGuCCGUc -3'
miRNA:   3'- -GUGG-GGCGGCc---UCUAGuaCCgC-GGCA- -5'
14285 5' -61.6 NC_003521.1 + 224414 0.66 0.76536
Target:  5'- aCACCUCGCCGGc---CA-GGCGCUGc -3'
miRNA:   3'- -GUGGGGCGGCCucuaGUaCCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 13986 0.66 0.76536
Target:  5'- uGCCCgGCgCGGcggcgggcgaGGAcccCAUGGCGCUGUa -3'
miRNA:   3'- gUGGGgCG-GCC----------UCUa--GUACCGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 117341 0.66 0.756462
Target:  5'- aCACCCCGCCGGcgacGGA-CAcGGaGCUGa -3'
miRNA:   3'- -GUGGGGCGGCC----UCUaGUaCCgCGGCa -5'
14285 5' -61.6 NC_003521.1 + 123254 0.66 0.756462
Target:  5'- gCGCCCaguagaCGCCGG-GAUCGUaGGCuCCGa -3'
miRNA:   3'- -GUGGG------GCGGCCuCUAGUA-CCGcGGCa -5'
14285 5' -61.6 NC_003521.1 + 129259 0.67 0.751076
Target:  5'- --aCCCGCCGGcucagccgcaccucgAGGUagaGGCGCCGg -3'
miRNA:   3'- gugGGGCGGCC---------------UCUAguaCCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 8624 0.67 0.747467
Target:  5'- cCACcaCCCGCgGGGGccCAUGGCGUgGg -3'
miRNA:   3'- -GUG--GGGCGgCCUCuaGUACCGCGgCa -5'
14285 5' -61.6 NC_003521.1 + 122958 0.67 0.747467
Target:  5'- gGCCUCGCCGGGGAaacUCA-GGUccucGUCGg -3'
miRNA:   3'- gUGGGGCGGCCUCU---AGUaCCG----CGGCa -5'
14285 5' -61.6 NC_003521.1 + 30637 0.67 0.747467
Target:  5'- cCGCCaCCGgCGGcGcgccugcucGUCAUGGCGCCu- -3'
miRNA:   3'- -GUGG-GGCgGCCuC---------UAGUACCGCGGca -5'
14285 5' -61.6 NC_003521.1 + 179233 0.67 0.747467
Target:  5'- -gUCCCGCCGcGGGccuUC-UGGCGCCu- -3'
miRNA:   3'- guGGGGCGGC-CUCu--AGuACCGCGGca -5'
14285 5' -61.6 NC_003521.1 + 121757 0.67 0.747467
Target:  5'- cUugCCCGaCUGGuGGAUgAUGGUGUCGg -3'
miRNA:   3'- -GugGGGC-GGCC-UCUAgUACCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 210093 0.67 0.742027
Target:  5'- gACCCCacgagGUCGGAGGUCacgcgacaugagcccGcGGCGCCGc -3'
miRNA:   3'- gUGGGG-----CGGCCUCUAG---------------UaCCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 208711 0.67 0.738384
Target:  5'- --aCCUGCCcGAGAUCAgccGCGCCGc -3'
miRNA:   3'- gugGGGCGGcCUCUAGUac-CGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 209506 0.67 0.72922
Target:  5'- -uCCUCGUgGGGGGUCAcGGUGaCCGUc -3'
miRNA:   3'- guGGGGCGgCCUCUAGUaCCGC-GGCA- -5'
14285 5' -61.6 NC_003521.1 + 13852 0.67 0.72922
Target:  5'- gGCUCgGCgCGGGGGUCucugcgggcGGCGCCGc -3'
miRNA:   3'- gUGGGgCG-GCCUCUAGua-------CCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 118183 0.67 0.719982
Target:  5'- gACgCCCGCCGGcaaaGUCggGGCcGCCGa -3'
miRNA:   3'- gUG-GGGCGGCCuc--UAGuaCCG-CGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.