miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14285 5' -61.6 NC_003521.1 + 757 0.72 0.45906
Target:  5'- aGCCCCacGCCGGAGGccaagCA-GGCGCCa- -3'
miRNA:   3'- gUGGGG--CGGCCUCUa----GUaCCGCGGca -5'
14285 5' -61.6 NC_003521.1 + 2462 0.66 0.76536
Target:  5'- gCGCCCCGCUauGGGUacgcgacGGCGCCGg -3'
miRNA:   3'- -GUGGGGCGGccUCUAgua----CCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 5685 0.68 0.663435
Target:  5'- gGCgCCCGUccgCGGGGAaCG-GGCGCCGUc -3'
miRNA:   3'- gUG-GGGCG---GCCUCUaGUaCCGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 7219 1.06 0.002604
Target:  5'- gCACCCCGCCGGAGAUCAUGGCGCCGUu -3'
miRNA:   3'- -GUGGGGCGGCCUCUAGUACCGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 8624 0.67 0.747467
Target:  5'- cCACcaCCCGCgGGGGccCAUGGCGUgGg -3'
miRNA:   3'- -GUG--GGGCGgCCUCuaGUACCGCGgCa -5'
14285 5' -61.6 NC_003521.1 + 13852 0.67 0.72922
Target:  5'- gGCUCgGCgCGGGGGUCucugcgggcGGCGCCGc -3'
miRNA:   3'- gUGGGgCG-GCCUCUAGua-------CCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 13890 0.66 0.791406
Target:  5'- gAUUUCGCCGGGGggCccGGCGCgGa -3'
miRNA:   3'- gUGGGGCGGCCUCuaGuaCCGCGgCa -5'
14285 5' -61.6 NC_003521.1 + 13986 0.66 0.76536
Target:  5'- uGCCCgGCgCGGcggcgggcgaGGAcccCAUGGCGCUGUa -3'
miRNA:   3'- gUGGGgCG-GCC----------UCUa--GUACCGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 17418 0.74 0.336018
Target:  5'- aCGCCgCGCCGGGGcgccacacggcccgcGUCggGGCGCCGc -3'
miRNA:   3'- -GUGGgGCGGCCUC---------------UAGuaCCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 18723 0.66 0.774155
Target:  5'- gGCUgCCGCUGGcggcggcGAUCGUGGCGgCGg -3'
miRNA:   3'- gUGG-GGCGGCCu------CUAGUACCGCgGCa -5'
14285 5' -61.6 NC_003521.1 + 19017 0.68 0.634767
Target:  5'- cCGCCCCGCCgacGGAGccCAUGccCGCCGa -3'
miRNA:   3'- -GUGGGGCGG---CCUCuaGUACc-GCGGCa -5'
14285 5' -61.6 NC_003521.1 + 23535 0.7 0.568095
Target:  5'- cCACCCUGUCGGuGGUgGUGGCcagcGCCu- -3'
miRNA:   3'- -GUGGGGCGGCCuCUAgUACCG----CGGca -5'
14285 5' -61.6 NC_003521.1 + 24629 0.67 0.710679
Target:  5'- gACCCCgcGCCGGuGcUCAgcgccuucguccUGGCGCUGg -3'
miRNA:   3'- gUGGGG--CGGCCuCuAGU------------ACCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 30637 0.67 0.747467
Target:  5'- cCGCCaCCGgCGGcGcgccugcucGUCAUGGCGCCu- -3'
miRNA:   3'- -GUGG-GGCgGCCuC---------UAGUACCGCGGca -5'
14285 5' -61.6 NC_003521.1 + 31283 0.68 0.691905
Target:  5'- cCACCCCGCCGG-GcgCAUaaccgcggcagcGGCGaCGg -3'
miRNA:   3'- -GUGGGGCGGCCuCuaGUA------------CCGCgGCa -5'
14285 5' -61.6 NC_003521.1 + 33470 0.68 0.634767
Target:  5'- gGCCCUGaCUGGAGAcccagaUCucgGGCGCCa- -3'
miRNA:   3'- gUGGGGC-GGCCUCU------AGua-CCGCGGca -5'
14285 5' -61.6 NC_003521.1 + 35490 0.68 0.691905
Target:  5'- uGCCgCCGCCGaGGA----GGCGCCGUa -3'
miRNA:   3'- gUGG-GGCGGCcUCUaguaCCGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 36530 0.68 0.65962
Target:  5'- --aCCCGCCGGucgucggcaugccGGUCAUGucgaGCGCCGUc -3'
miRNA:   3'- gugGGGCGGCCu------------CUAGUAC----CGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 38811 0.69 0.60608
Target:  5'- --aCCC-CCGGAccuGGUCGcGGCGCCGUg -3'
miRNA:   3'- gugGGGcGGCCU---CUAGUaCCGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 39436 0.66 0.774155
Target:  5'- uGCCgCUGCCGGccGAgCccGGCGCCGa -3'
miRNA:   3'- gUGG-GGCGGCCu-CUaGuaCCGCGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.