miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14285 5' -61.6 NC_003521.1 + 110474 0.68 0.691905
Target:  5'- uGCUCCagGCaGGGGAUCAgGGCGCUGa -3'
miRNA:   3'- gUGGGG--CGgCCUCUAGUaCCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 85454 0.68 0.634767
Target:  5'- -uCCgCGCCGGcGAgaaagguggucgUCGUGGUGCCGg -3'
miRNA:   3'- guGGgGCGGCCuCU------------AGUACCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 47654 0.68 0.644333
Target:  5'- cCGCuCCCGCCGGcuccugAGAUgcUGuGCGCCGa -3'
miRNA:   3'- -GUG-GGGCGGCC------UCUAguAC-CGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 133475 0.68 0.653892
Target:  5'- cCGCCCgagGUCGaGGAUCAccUGGCGCCGc -3'
miRNA:   3'- -GUGGGg--CGGCcUCUAGU--ACCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 116531 0.68 0.663435
Target:  5'- uCACCUCGCCgcgcuuucuGGAGAUCGUcagccGCGCCu- -3'
miRNA:   3'- -GUGGGGCGG---------CCUCUAGUAc----CGCGGca -5'
14285 5' -61.6 NC_003521.1 + 5685 0.68 0.663435
Target:  5'- gGCgCCCGUccgCGGGGAaCG-GGCGCCGUc -3'
miRNA:   3'- gUG-GGGCG---GCCUCUaGUaCCGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 85499 0.68 0.672957
Target:  5'- -cCCCCGCCGGGacccgcGGUCGUcucacccaGGaCGCCGa -3'
miRNA:   3'- guGGGGCGGCCU------CUAGUA--------CC-GCGGCa -5'
14285 5' -61.6 NC_003521.1 + 137195 0.68 0.672957
Target:  5'- -cCCCCGCUGGAG-UC--GGCgGCCGg -3'
miRNA:   3'- guGGGGCGGCCUCuAGuaCCG-CGGCa -5'
14285 5' -61.6 NC_003521.1 + 153944 0.68 0.672957
Target:  5'- --aCCCGCCGcGccGUCAUGGUGUCGa -3'
miRNA:   3'- gugGGGCGGC-CucUAGUACCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 33470 0.68 0.634767
Target:  5'- gGCCCUGaCUGGAGAcccagaUCucgGGCGCCa- -3'
miRNA:   3'- gUGGGGC-GGCCUCU------AGua-CCGCGGca -5'
14285 5' -61.6 NC_003521.1 + 117270 0.69 0.615633
Target:  5'- cCACCgCCGUCGucGGcCGUGGUGCCGg -3'
miRNA:   3'- -GUGG-GGCGGCcuCUaGUACCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 239038 0.69 0.60608
Target:  5'- --aCCC-CCGGAccuGGUCGcGGCGCCGUg -3'
miRNA:   3'- gugGGGcGGCCU---CUAGUaCCGCGGCA- -5'
14285 5' -61.6 NC_003521.1 + 200984 0.72 0.45906
Target:  5'- aGCCCCacGCCGGAGGccaagCA-GGCGCCa- -3'
miRNA:   3'- gUGGGG--CGGCCUCUa----GUaCCGCGGca -5'
14285 5' -61.6 NC_003521.1 + 186505 0.72 0.45906
Target:  5'- aGCCCCGUCGG-GAUCucgGGCGgUGUc -3'
miRNA:   3'- gUGGGGCGGCCuCUAGua-CCGCgGCA- -5'
14285 5' -61.6 NC_003521.1 + 44267 0.71 0.512387
Target:  5'- uCACgCCGgaGGAGAUCAgcgugcaccugGGCGCCGa -3'
miRNA:   3'- -GUGgGGCggCCUCUAGUa----------CCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 82632 0.7 0.549316
Target:  5'- aCACgCCGCCGGAGGag--GGCGuCCGc -3'
miRNA:   3'- -GUGgGGCGGCCUCUaguaCCGC-GGCa -5'
14285 5' -61.6 NC_003521.1 + 143814 0.7 0.558683
Target:  5'- aACCCgCGCaaccccaGcGAGAUCGUGcGCGCCGc -3'
miRNA:   3'- gUGGG-GCGg------C-CUCUAGUAC-CGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 168665 0.7 0.558683
Target:  5'- uGCCgacggCGCCGGAGGUCccugGUGGCagGCCGUc -3'
miRNA:   3'- gUGGg----GCGGCCUCUAG----UACCG--CGGCA- -5'
14285 5' -61.6 NC_003521.1 + 45260 0.69 0.58703
Target:  5'- gACCCCcaagcgcuucCUGGAGAUCAUggaccgGGCGCCGc -3'
miRNA:   3'- gUGGGGc---------GGCCUCUAGUA------CCGCGGCa -5'
14285 5' -61.6 NC_003521.1 + 143167 0.69 0.58703
Target:  5'- gAUCCCG-UGGGGGUCGgacccGGCGCCGc -3'
miRNA:   3'- gUGGGGCgGCCUCUAGUa----CCGCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.