miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 209398 0.66 0.569073
Target:  5'- aGUCGU-CUUCGGCGGCgCa-CAGGGCa -3'
miRNA:   3'- -CGGCAcGGGGUCGCCGgGgcGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 2055 0.66 0.569073
Target:  5'- uGCCGUGuCCCCAccucuGuCGaGCUCCGCc-GGCc -3'
miRNA:   3'- -CGGCAC-GGGGU-----C-GC-CGGGGCGucCCG- -5'
14286 3' -66.9 NC_003521.1 + 216400 0.66 0.569073
Target:  5'- cGCCG-GCCCCugcgccgucuGGCuuucuauGCUCCGC-GGGCc -3'
miRNA:   3'- -CGGCaCGGGG----------UCGc------CGGGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 1449 0.66 0.569073
Target:  5'- aGCUGcGCCgCCGGUGGCa--GCAcacGGGCa -3'
miRNA:   3'- -CGGCaCGG-GGUCGCCGgggCGU---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 62101 0.66 0.569073
Target:  5'- aCCGggaacGCUUCGGC-GCCCgCGCGGGGa -3'
miRNA:   3'- cGGCa----CGGGGUCGcCGGG-GCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 67533 0.66 0.569073
Target:  5'- cCCGUaagaCCCAGCGGCCCUuCAaGGUu -3'
miRNA:   3'- cGGCAcg--GGGUCGCCGGGGcGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 49749 0.66 0.569073
Target:  5'- cGCCGccGCCaCCA-CGGUCgCCGCGGGa- -3'
miRNA:   3'- -CGGCa-CGG-GGUcGCCGG-GGCGUCCcg -5'
14286 3' -66.9 NC_003521.1 + 164833 0.66 0.569073
Target:  5'- -aCGUGCUgaCGGC-GCCCgGCgAGGGCc -3'
miRNA:   3'- cgGCACGGg-GUCGcCGGGgCG-UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 137248 0.66 0.569073
Target:  5'- gGCCGggGCCgaCGGCGGCa--GC-GGGCa -3'
miRNA:   3'- -CGGCa-CGGg-GUCGCCGgggCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 201676 0.66 0.569073
Target:  5'- aGCUGcGCCgCCGGUGGCa--GCAcacGGGCa -3'
miRNA:   3'- -CGGCaCGG-GGUCGCCGgggCGU---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 202283 0.66 0.569073
Target:  5'- uGCCGUGuCCCCAccucuGuCGaGCUCCGCc-GGCc -3'
miRNA:   3'- -CGGCAC-GGGGU-----C-GC-CGGGGCGucCCG- -5'
14286 3' -66.9 NC_003521.1 + 99542 0.66 0.569073
Target:  5'- aCCGUGCCgCAGCGGUaggugCC-CAuGGCg -3'
miRNA:   3'- cGGCACGGgGUCGCCGg----GGcGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 221829 0.66 0.569073
Target:  5'- cGuuGUGCaaCAGCuGGCCgCUGU-GGGCg -3'
miRNA:   3'- -CggCACGggGUCG-CCGG-GGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 104963 0.66 0.569073
Target:  5'- gGUCGUGCCgCGGgGGCgCCGCgagacgucggAGGaGUc -3'
miRNA:   3'- -CGGCACGGgGUCgCCGgGGCG----------UCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 457 0.66 0.559974
Target:  5'- cGCCGUuuGCCUCugaaaacuaCGuGCUCCGCgAGGGCc -3'
miRNA:   3'- -CGGCA--CGGGGuc-------GC-CGGGGCG-UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 7964 0.66 0.559974
Target:  5'- cGCgGUGUCgCGGCcgggaGGgUCCGCGGcGGCg -3'
miRNA:   3'- -CGgCACGGgGUCG-----CCgGGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 234110 0.66 0.559974
Target:  5'- gGCCcUGCaccacggcgagaCCCAGCaGCgCUCGCGGGcGCa -3'
miRNA:   3'- -CGGcACG------------GGGUCGcCG-GGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 145042 0.66 0.559974
Target:  5'- -gCGUGgCCgAGCGGCacgaugaCCGUcuGGGCg -3'
miRNA:   3'- cgGCACgGGgUCGCCGg------GGCGu-CCCG- -5'
14286 3' -66.9 NC_003521.1 + 200684 0.66 0.559974
Target:  5'- cGCCGUuuGCCUCugaaaacuaCGuGCUCCGCgAGGGCc -3'
miRNA:   3'- -CGGCA--CGGGGuc-------GC-CGGGGCG-UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 148706 0.66 0.559974
Target:  5'- cCCGaaccGCaCCCGGgGGUUCCGaccCGGGGCa -3'
miRNA:   3'- cGGCa---CG-GGGUCgCCGGGGC---GUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.