miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 123327 0.66 0.532044
Target:  5'- aGCCGUccgaacaccgacgGCCCCAGCgccgcggccguGGCCuCCGaCAGccgcaccgacaGGCg -3'
miRNA:   3'- -CGGCA-------------CGGGGUCG-----------CCGG-GGC-GUC-----------CCG- -5'
14286 3' -66.9 NC_003521.1 + 225079 0.66 0.541902
Target:  5'- uGCUGcUGCCCgGGC-GCaCCUGCAGGa- -3'
miRNA:   3'- -CGGC-ACGGGgUCGcCG-GGGCGUCCcg -5'
14286 3' -66.9 NC_003521.1 + 239919 0.66 0.532938
Target:  5'- cGCCGUGCgCCAGaUGGUgCC-CAuGGCu -3'
miRNA:   3'- -CGGCACGgGGUC-GCCGgGGcGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 96776 0.66 0.515175
Target:  5'- cGCCGUcGCCgCCggcagcAGCGGCggCGCucGGGCa -3'
miRNA:   3'- -CGGCA-CGG-GG------UCGCCGggGCGu-CCCG- -5'
14286 3' -66.9 NC_003521.1 + 69264 0.66 0.524916
Target:  5'- gGCCGacgugGCaagcggucuguuuaaCCAGCGcgcaGCCCCGacaCAGGGCg -3'
miRNA:   3'- -CGGCa----CGg--------------GGUCGC----CGGGGC---GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 32990 0.66 0.532938
Target:  5'- ----aGCCCUGGCGgaugaaGCCCCGCA-GGCu -3'
miRNA:   3'- cggcaCGGGGUCGC------CGGGGCGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 175988 0.66 0.536517
Target:  5'- cGCCGUggagauccccuguuaGCCCCGGaCGGUgUuuGUGGGGUc -3'
miRNA:   3'- -CGGCA---------------CGGGGUC-GCCG-GggCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 99795 0.66 0.532938
Target:  5'- aGuuGUGCCCCAGCccUCCUGguGGuCg -3'
miRNA:   3'- -CggCACGGGGUCGccGGGGCguCCcG- -5'
14286 3' -66.9 NC_003521.1 + 100103 0.66 0.517824
Target:  5'- cGUCGUGCgacagcaggaugcgaCCCcgcggcuGGCGGUCCUGCgggaaggccguGGGGCu -3'
miRNA:   3'- -CGGCACG---------------GGG-------UCGCCGGGGCG-----------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 129993 0.66 0.524027
Target:  5'- uGCCGcUGCgCCGGCGGCggCgCGCAacGGCc -3'
miRNA:   3'- -CGGC-ACGgGGUCGCCG--GgGCGUc-CCG- -5'
14286 3' -66.9 NC_003521.1 + 148578 0.66 0.532938
Target:  5'- aCCG-GCCaaaagaCCGcGCGGCgCCCGUcGGGCc -3'
miRNA:   3'- cGGCaCGG------GGU-CGCCG-GGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 67533 0.66 0.569073
Target:  5'- cCCGUaagaCCCAGCGGCCCUuCAaGGUu -3'
miRNA:   3'- cGGCAcg--GGGUCGCCGGGGcGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 114920 0.66 0.521365
Target:  5'- -aCGUGUCCCucgAGCGGCUgcuggagagcugcuCgCGCAGcGGCg -3'
miRNA:   3'- cgGCACGGGG---UCGCCGG--------------G-GCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 89958 0.66 0.524027
Target:  5'- aGCCGcGUCuCUGGCGGCCgUuCGGGGUu -3'
miRNA:   3'- -CGGCaCGG-GGUCGCCGGgGcGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 163746 0.66 0.515175
Target:  5'- cGCCGgcgGCaaCAGCGGCgCUcacgGCGGcGGCa -3'
miRNA:   3'- -CGGCa--CGggGUCGCCGgGG----CGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 92388 0.66 0.541902
Target:  5'- uGCCGUcGCUCCGcCGGCUCCuCcGGGUc -3'
miRNA:   3'- -CGGCA-CGGGGUcGCCGGGGcGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 30260 0.66 0.515175
Target:  5'- uGCCGUGgCgCAGCuGaCCCUGgCGGGcGCg -3'
miRNA:   3'- -CGGCACgGgGUCGcC-GGGGC-GUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 3659 0.66 0.527585
Target:  5'- cGCCGUcuGCCUCGGCGGCcgggaCCCucgucggaugcugacGCgggauauaaaAGGGCg -3'
miRNA:   3'- -CGGCA--CGGGGUCGCCG-----GGG---------------CG----------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 118198 0.66 0.514293
Target:  5'- aGUCGggGCCgCCGagcgcGCGGCCgCCGCcgucgccGGGGUg -3'
miRNA:   3'- -CGGCa-CGG-GGU-----CGCCGG-GGCG-------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 84905 0.66 0.515175
Target:  5'- gGCCGUcaGCgCC--CGGUCCaGCAGGGCc -3'
miRNA:   3'- -CGGCA--CGgGGucGCCGGGgCGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.