miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 118198 0.66 0.514293
Target:  5'- aGUCGggGCCgCCGagcgcGCGGCCgCCGCcgucgccGGGGUg -3'
miRNA:   3'- -CGGCa-CGG-GGU-----CGCCGG-GGCG-------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 69264 0.66 0.524916
Target:  5'- gGCCGacgugGCaagcggucuguuuaaCCAGCGcgcaGCCCCGacaCAGGGCg -3'
miRNA:   3'- -CGGCa----CGg--------------GGUCGC----CGGGGC---GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 200684 0.66 0.559974
Target:  5'- cGCCGUuuGCCUCugaaaacuaCGuGCUCCGCgAGGGCc -3'
miRNA:   3'- -CGGCA--CGGGGuc-------GC-CGGGGCG-UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 209205 0.66 0.550915
Target:  5'- cGUCG-GCCgCGGUGGCCCUGCca-GCu -3'
miRNA:   3'- -CGGCaCGGgGUCGCCGGGGCGuccCG- -5'
14286 3' -66.9 NC_003521.1 + 32990 0.66 0.532938
Target:  5'- ----aGCCCUGGCGgaugaaGCCCCGCA-GGCu -3'
miRNA:   3'- cggcaCGGGGUCGC------CGGGGCGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 62101 0.66 0.569073
Target:  5'- aCCGggaacGCUUCGGC-GCCCgCGCGGGGa -3'
miRNA:   3'- cGGCa----CGGGGUCGcCGGG-GCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 129993 0.66 0.524027
Target:  5'- uGCCGcUGCgCCGGCGGCggCgCGCAacGGCc -3'
miRNA:   3'- -CGGC-ACGgGGUCGCCG--GgGCGUc-CCG- -5'
14286 3' -66.9 NC_003521.1 + 104963 0.66 0.569073
Target:  5'- gGUCGUGCCgCGGgGGCgCCGCgagacgucggAGGaGUc -3'
miRNA:   3'- -CGGCACGGgGUCgCCGgGGCG----------UCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 35490 0.66 0.541902
Target:  5'- uGCCGccGCCgaGGaGGCgCCGUAGGGUg -3'
miRNA:   3'- -CGGCa-CGGggUCgCCGgGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 148578 0.66 0.532938
Target:  5'- aCCG-GCCaaaagaCCGcGCGGCgCCCGUcGGGCc -3'
miRNA:   3'- cGGCaCGG------GGU-CGCCG-GGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 92388 0.66 0.541902
Target:  5'- uGCCGUcGCUCCGcCGGCUCCuCcGGGUc -3'
miRNA:   3'- -CGGCA-CGGGGUcGCCGGGGcGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 67533 0.66 0.569073
Target:  5'- cCCGUaagaCCCAGCGGCCCUuCAaGGUu -3'
miRNA:   3'- cGGCAcg--GGGUCGCCGGGGcGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 99542 0.66 0.569073
Target:  5'- aCCGUGCCgCAGCGGUaggugCC-CAuGGCg -3'
miRNA:   3'- cGGCACGGgGUCGCCGg----GGcGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 234110 0.66 0.559974
Target:  5'- gGCCcUGCaccacggcgagaCCCAGCaGCgCUCGCGGGcGCa -3'
miRNA:   3'- -CGGcACG------------GGGUCGcCG-GGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 102784 0.66 0.541902
Target:  5'- uGCgCGaugacGCgCCGGCGGCCgCCaGCucGGGCg -3'
miRNA:   3'- -CG-GCa----CGgGGUCGCCGG-GG-CGu-CCCG- -5'
14286 3' -66.9 NC_003521.1 + 47859 0.66 0.550012
Target:  5'- cGCCGUGgCCgAGaacaugcugaucaUGGCCCaguguccCAGGGCg -3'
miRNA:   3'- -CGGCACgGGgUC-------------GCCGGGgc-----GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 186836 0.66 0.559974
Target:  5'- -aCG-GUCCUgcgaauGGCGGCCCaGCGGcGGCg -3'
miRNA:   3'- cgGCaCGGGG------UCGCCGGGgCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 209398 0.66 0.569073
Target:  5'- aGUCGU-CUUCGGCGGCgCa-CAGGGCa -3'
miRNA:   3'- -CGGCAcGGGGUCGCCGgGgcGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 201676 0.66 0.569073
Target:  5'- aGCUGcGCCgCCGGUGGCa--GCAcacGGGCa -3'
miRNA:   3'- -CGGCaCGG-GGUCGCCGgggCGU---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 175988 0.66 0.536517
Target:  5'- cGCCGUggagauccccuguuaGCCCCGGaCGGUgUuuGUGGGGUc -3'
miRNA:   3'- -CGGCA---------------CGGGGUC-GCCG-GggCGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.