miRNA display CGI


Results 61 - 80 of 289 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 122948 0.66 0.524027
Target:  5'- gGCCGUGCU----CGGCCUCGcCGGGGa -3'
miRNA:   3'- -CGGCACGGggucGCCGGGGC-GUCCCg -5'
14286 3' -66.9 NC_003521.1 + 136615 0.66 0.515175
Target:  5'- cGCUGgGCUgCAGCagcacguaaucGGCCacgggCGCGGGGCg -3'
miRNA:   3'- -CGGCaCGGgGUCG-----------CCGGg----GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 237382 0.66 0.532938
Target:  5'- aGCCuGUGCCCuCGGCgucGGCaUgGCGGGGg -3'
miRNA:   3'- -CGG-CACGGG-GUCG---CCGgGgCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 129179 0.66 0.539207
Target:  5'- cGgCGUGCggcgguuuggguuuCgCCGGCGGUUcgaccucgucgCCGCGGGGCg -3'
miRNA:   3'- -CgGCACG--------------G-GGUCGCCGG-----------GGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 221829 0.66 0.569073
Target:  5'- cGuuGUGCaaCAGCuGGCCgCUGU-GGGCg -3'
miRNA:   3'- -CggCACGggGUCG-CCGG-GGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 84905 0.66 0.515175
Target:  5'- gGCCGUcaGCgCC--CGGUCCaGCAGGGCc -3'
miRNA:   3'- -CGGCA--CGgGGucGCCGGGgCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 96776 0.66 0.515175
Target:  5'- cGCCGUcGCCgCCggcagcAGCGGCggCGCucGGGCa -3'
miRNA:   3'- -CGGCA-CGG-GG------UCGCCGggGCGu-CCCG- -5'
14286 3' -66.9 NC_003521.1 + 163746 0.66 0.515175
Target:  5'- cGCCGgcgGCaaCAGCGGCgCUcacgGCGGcGGCa -3'
miRNA:   3'- -CGGCa--CGggGUCGCCGgGG----CGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 100103 0.66 0.517824
Target:  5'- cGUCGUGCgacagcaggaugcgaCCCcgcggcuGGCGGUCCUGCgggaaggccguGGGGCu -3'
miRNA:   3'- -CGGCACG---------------GGG-------UCGCCGGGGCG-----------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 30260 0.66 0.515175
Target:  5'- uGCCGUGgCgCAGCuGaCCCUGgCGGGcGCg -3'
miRNA:   3'- -CGGCACgGgGUCGcC-GGGGC-GUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 118198 0.66 0.514293
Target:  5'- aGUCGggGCCgCCGagcgcGCGGCCgCCGCcgucgccGGGGUg -3'
miRNA:   3'- -CGGCa-CGG-GGU-----CGCCGG-GGCG-------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 209205 0.66 0.550915
Target:  5'- cGUCG-GCCgCGGUGGCCCUGCca-GCu -3'
miRNA:   3'- -CGGCaCGGgGUCGCCGGGGCGuccCG- -5'
14286 3' -66.9 NC_003521.1 + 2055 0.66 0.569073
Target:  5'- uGCCGUGuCCCCAccucuGuCGaGCUCCGCc-GGCc -3'
miRNA:   3'- -CGGCAC-GGGGU-----C-GC-CGGGGCGucCCG- -5'
14286 3' -66.9 NC_003521.1 + 16977 0.66 0.524027
Target:  5'- aGCCGcagcagcaGCCgcagggaCAGCaGGCgCCCGCGGuGGCg -3'
miRNA:   3'- -CGGCa-------CGGg------GUCG-CCG-GGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 7964 0.66 0.559974
Target:  5'- cGCgGUGUCgCGGCcgggaGGgUCCGCGGcGGCg -3'
miRNA:   3'- -CGgCACGGgGUCG-----CCgGGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 49749 0.66 0.569073
Target:  5'- cGCCGccGCCaCCA-CGGUCgCCGCGGGa- -3'
miRNA:   3'- -CGGCa-CGG-GGUcGCCGG-GGCGUCCcg -5'
14286 3' -66.9 NC_003521.1 + 216400 0.66 0.569073
Target:  5'- cGCCG-GCCCCugcgccgucuGGCuuucuauGCUCCGC-GGGCc -3'
miRNA:   3'- -CGGCaCGGGG----------UCGc------CGGGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 55608 0.67 0.505508
Target:  5'- cGUCGUacacgcaGUCCCGcGCGGCCCacacCG-AGGGCg -3'
miRNA:   3'- -CGGCA-------CGGGGU-CGCCGGG----GCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 71281 0.67 0.506383
Target:  5'- gGCgGggGCCgCGGCacgGGCCCC-UGGGGCa -3'
miRNA:   3'- -CGgCa-CGGgGUCG---CCGGGGcGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 64746 0.67 0.48041
Target:  5'- cGCCGUgGCCaagacgCCGGcCGGCgCgGCAccGGGCg -3'
miRNA:   3'- -CGGCA-CGG------GGUC-GCCGgGgCGU--CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.